|
|
Domain boundaries of a largely non-redundant set of proteins for which structures have been submitted in the Brookhaven Protein Data Bank (Bernstein F.C. et al. & Tasumi, M., J. Mol. Biol. 112, 535-542 (1977)). The non-homologous dataserver at EMBL (by Hobohm, U., Scharf, M., Schneider, R. & Sander, C., Protein Science , 1, 409-417 (1992)) has been used as a guideline to obtain this dataset.
Domains have been identified based on the clustering of secondary structures. For details of the method you may also see the papers
( An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins by Sowdhamini, R. and Blundell, T.L. Protein Science , 4 , 506-520 (1995).
A database of globular protein structural domains : Clustering of representative family members into similar folds by Sowdhamini, R., Rufino, S.D. & Blundell, T.L. Folding and Design (in press). This algorithm has presently been applied to 436 protein chains. This table will be periodically updated (currently 14th Feb. 1996).
Section 10 Index
Index to Course Material
Table 1 : LIST OF PROTEIN DOMAINS USED FOR THE ANALYSIS.
_______________________________________________________________________________________________________________________________________________________
PDB Ch. No. of D Domain boundaries Helix content Protein name Helix content
code domains f for domains for full chain
_______________________________________________________________________________________________________________________________________________________
119l 2 1.32657 85 -155; 1.00 a Lysozyme (Bacteriophage T4)
3 - 80; 0.75 a
153l 2m 1.10290 18 - 74;169 -182; 1.00 a Lysozyme (Goose) 0.96 a
90 -149; 0.90 a
1aaj 2m 1.06212 3 - 4; 34 - 38; 56 - 68; 86 -105; 0.00 b Amicyanin 0.00 b
11 - 30; 42 - 47; 76 - 82; 0.00 b
1aak 2c 1.29120 8 -114; 0.46 ab Ubiquitin Conjugating Enzyme
(124 -147;)
1abr B 2 1.59486 145 -265; 0.00 b Abrin-a
15 -138; 0.00 b
1add 2m 1.13004 11 - 17; 58 - 61; 95 -102;147 -350; 0.67 ab Adenosine Deaminase 0.76 a,ab
24 - 50; 69 - 92;126 -144; 1.00 a
1ads 2m 1.08695 3 -209;244 -273; 0.70 ab Aldose Reductase 0.74 ab
231 -240;282 -289; 1.00 a
1aep 1 1.00 a Apolipophorin III
1afp 1 0.00 b Antifungal Protein
1agx 2 1.52753 3 -191; 0.53 ab Glutaminase-asparaginase
218 -328; 0.68 ab
1alk A 2 1.12236 30 - 50; 80 -258;299 -323;335 -367;417 -446; 0.62 ab Alkaline Phosphatase
55 - 65;268 -288;325 -331;375 -402; 0.51 ab
1amp 1 0.67 ab Aminopeptidase
1amy 2c 1.12078 3 - 88;154 -402; 0.63 ab Alpha-1,4 Glycan-4-glucanohydrolase
(97 -106;)
1aor A 4 1.29249 7 -204;520 -541;593 -599; 0.55 ab Aldehyde Ferredoxin Oxidoreductase
344 -491;545 -583; 0.96 a
232 -340; 0.75 ab
214 -230;503 -514; 1.00 a
1aoz A 3 1.35386 149 -155;345 -545; 0.28 ab Ascorbate Oxidase
135 -144;169 -327; 0.10 b
3 -122; 0.00 b
1apl C 1 1.00 a Mat Alpha2 Homeodomain
1apm E 3c+ 1.37148 43 -121;162 -163;189 -190; 0.31 ab c-AMP-dependent Protein Kinase
128 -159;172 -182;218 -233;263 -307; 0.91 a
(207-210; 243-252;)
1apv E 3 1.44151 192 -303; 0.18 b Acid Proteinase
17 -144; 0.23 ab ,b
4 - 10;152 -183;306 -321; 0.00 b
1arb 2 1.10574 8 - 9;130 -262; 0.19 b Achromobacter Protease I
25 -119; 0.12 b
1ars 2+ 1.27450 51 -159;170 -310; 0.70 ab Aspartate Aminotransferase
18 - 34;161 -168;313 -405; 0.82 a
1ash 2m 1.16251 1 - 10; 82 -144; 1.00 a Hemoglobin 1.00 a
20 - 77; 1.00 a
1asz A 3 1.60920 242 -269;303 -484;522 -537; 0.65 ab Aspartyl Trna Synthetase
75 -238; 0.34 ab
275 -298;489 -513; 0.82 a
1atn A 4 1.61198 136 -177;273 -329; 0.57 ab Deoxyribonuclease I
15 - 90; 0.43 ab
7 - 11;102 -135;337 -370; 0.67 ab
181 -261; 0.85 a
1atx 1 0.00 b ATX Ia
1aty 1 1.00 a F1fo Atp Synthase Subunit C
1aya A 2m 1.28353 13 - 55;100 -101; 0.32 ab Tyrosine Phosphatase 0.44 ab
57 - 83; 0.71 ab
1baa 2 1.36096 31 - 39;112 -159; 0.88 a Endochitinase
8 - 14; 51 - 67;168 -171;191 -226; 1.00 a
1bab B 2m 1.29983 20 - 74;101 -118; 1.00 a Hemoglobin 1.00 a
5 - 15;124 -142; 1.00 a
1bar A 1 0.00 b Acidic Fibroblast Growth Factor
1bbl - 1 1.00 a Dihydrolipoamide Succinyltransferase
1bbo - 1 0.83 a Human Enhancer-binding Protein
1bbp A 1 0.17 b Bilin Binding Protein
1bbt 1 1 0.18 b
1bbt 2 1 0.08 b
1bcf A 2m 1.25906 83 -144; 1.00 a Bacterioferritin 1.00 a
5 - 64; 1.00 a
1bct 1 1.00 a Bacteriorhodopsin
1bet 2m 1.17807 17 - 38; 53 -114; 0.00 b Beta-nerve Growth Factor 0.00 b
41 - 50; 0.00 b
1bge B 2m 1.07854 12 - 40; 72 -124; 1.00 a Granulocyte Colony-stimulating Factor 1.00 a
49 - 55;144 -169; 1.00 a
1bmd A 2 1.26825 4 -153;242 -298; 0.61 ab Malate Dehydrogenase
156 -237;306 -328; 0.83 a
1bpb 3 1.53733 150 -273; 0.56 ab Dna Polymerase Beta
276 -321; 0.80 ab
94 -141; 1.00 a
1bsa A 1 0.44 ab Barnase
1bw4 1 0.32 ab Barwin, Basic Barley Seed Protein
1c5a 1 1.00 a Des-arg==74==-complement C5a
1cau A 3m 1.45221 56 - 93;107 -114;137 -140;157 -164; 0.00 b Canavalin 0.15 bb
97 -104 ;116 -133 ;145 -150 ;174 -176 ; 0.00 b
192 -207 ; 1.00 a
1cau B 2c 1.19232 258 -378;418 -420; 0.08 b Canavalin
(392 -411;)
1cbn - 1 0.80 a Crambin
1ccf 2m 1.96045 76 - 84; 0.00 b Coagulation Factor X 0.00 b
60 - 71; 0.00 b
1ccr 2m 1.32376 58 - 82; 1.00 a Cytochrome c 1.00 a
11 - 21; 96 -109; 1.00 a
1cde 2+ 1.18110 2 -108; 0.59 ab Phosphoribosylglycinamide Formyltransferase
131 -202; 0.48 ab
1cdg 4* 17 - 406; 0.69 ab Cyclodextrin Glycosyltransferase
408 - 493; 0.00 b
500 - 581; 0.00 b
586 - 683; 0.00 b
1cdt A 2m 1.08645 20 - 54; 0.00 b Cardiotoxin V4II 0.00 b
2 - 13; 0.00 b
1cel A 3 1.34787 13 - 34; 78 -147;212 -228;274 -312;359 -425; 0.12 b 1,4-beta-d-glucan Cellobiohydrolase I
2 - 3; 41 - 73;182 -209;236 -239; 0.20 b
316 -356; 0.80 b
1cew I 1 0.30 ab Cystatin
1cfb 2 1.88515 721 -809; 0.00 b Drosophila Neuroglian
619 -708; 0.00 b
1chl 1 0.57 ab Chlorotoxin
1chm A 3 1.48344 6 -156; 0.66 ab Creatine Amidinohydrolase
219 -251;261 -311;360 -374;396 -401; 0.56 ab
161 -209;253 -258;329 -357;377 -388; 0.66 ab
1chr A 3+ 1.40620 135 -295; 0.69 ab Chloromuconate Cycloisomerase 0.75 ab
8 -116;360 -365; 0.89 a
120 -133;303 -347; 0.61 ab
1cid 2 1.31194 4 -110; 0.00 b Cd4
116 -176; 0.00 b
1cks A 1 0.60 ab Cyclin-dependent Kinase
1cmb A 1 0.91 a Met Apo-repressor
1cob A 1 0.00 b Superoxide Dismutase
1col A 2m 1.07425 76 -164; 1.00 a Colicin A 1.00 a
8 - 67;169 -198; 1.00 a
1cpc A 2c 1.11350 48 -172; 1.00 a C-phycocyanin
(4-46;)
1cpt 4 1.50628 9 - 91;318 -345; 0.65 ab Cytochrome P450
150 -156;287 -295;398 -427; 0.39 ab
130 -145;161 -185;254 -285;300 -311;380 -394; 1.00 a
109 -126;208 -244; 1.00 a
1cpy 3 1.36779 46 - 50; 89 - 91;140 -175;317 -415; 0.56 ab Carboxypeptidase
18 - 35; 59 - 79;103 -129;271 -287; 0.61 ab
181 -251;300 -307; 1.00 a
1crl 4 1.34743 136 -144;210 -220;236 -240;319 -338;416 -513; 0.69 ab Lipase (Triacylglycerol Hydrolase)
3 - 27; 99 -120;150 -154;177 -208;227 -232; 0.25 ab
73 - 90;159 -172;253 -291; 1.00 a
343 -414;519 -526; 1.00 a
1cse I 1 0.34 ab Subtilisin Carlsberg
1csk A 1 0.00 b C-src Kinase
1csp 1 0.00 b Major Cold Shock Protein
1ctm 2 1.46004 2 -154;235 -245; 0.20 b Cytochrome F
177 -221; 0.00 b
1ctn 3 1.66415 159 -192;267 -442;518 -555; 0.62 ab Chitinase A
30 -131;210 -262; 0.32 ab
444 -514; 0.21 ab ,b
1ctt 3 1.57723 32 - 33; 49 -160; 0.60 ab Cytidine Deaminase
190 -292; 0.57 ab
6 - 20; 35 - 44; 1.00 a
1cus 1 0.70 ab Cutinase
1d66 A 1 1.00 a Gal4
1ddt 3 1.97436 389 -534; 0.00 b Diphtheria Toxin
206 -376; 0.97 a
12 -182; 0.40 ab
1dec 2m 1.07675 27 - 38; 0.00 b Decorsin 0.00 b
15 - 22; 0.00 b
1dfn A 1 0.00 b Defensin HNP-3
1dge 3* 1.42128 62 -209;225 -323; 0.76 ab Dialkylglycine Decarboxylase
29 - 53;326 -432; 0.62 ab
212 -220; 0.00 a
1dhr 3m 1.05896 172 -238; 0.42 ab Dihydropteridine Reductase 0.61 ab
8 - 81;122 -131; 0.47 ab
96 -121;144 -160; 1.00 a
1dlc 3 1.60162 295 -296;503 -643; 0.00 b Delta-endotoxin Cryiiia
259 -275;302 -451;471 -495; 0.18 b
63 -253;277 -280; 1.00 a
1dmc 1 1.00 a Cd-6 Metallothionein-1
1dsb A 2 1.22563 9 - 60;129 -187; 0.71 ab Disulfide Bond Formation Protein
66 -127; 1.00 a
1dts 2 1.16583 2 -115; 0.68 ab Dethiobiotin Synthase
141 -203; 0.58 ab
1dyn A 2m 1.12180 62 -119; 0.41 ab Dynamin Pleckstrin Homology domain 0.22 ab ,b
12 - 58; 0.00 b
1eca 2m 1.22439 20 - 71; 94 -111; 1.00 a Hemoglobin 1.00 a
3 - 14; 77 - 87;118 -135; 1.00 a
1ede 2 1.15688 23 - 80; 99 -163;231 -307; 0.63 ab Haloalkane Dehalogenase
4 - 5; 90 - 91;172 -227; 0.90 a
1eft 3 1.62789 11 - 36; 66 -209; 0.68 ab Elongation Factor Tu
222 -305; 0.00 b
313 -403; 0.00 b
1enh 1 1.00 a Engrailed Homeodomain
1epa B 1 0.25 ab Epididymal Retinoic Acid-binding Prote
1erb 1 0.18 b Retinol Binding Protein
1erc 1 1.00 a Pheromone Er-1
1erd - 1 1.00 a Pheromone Er-2
1erg 2m 1.35378 25 - 64; 0.00 b Human Complement Regulatory Protein 0.00 b
3 - 17; 0.00 b
1eri A 2m 1.23561 21 -114;147 -170;221 -275; 0.62 ab Eco Ri Endonuclease 0.60 ab
118 -121;179 -191; 0.33 ab
1erp 1 1.00 a Pheromone Er-10
1etb 1 2m 1.29649 12 - 24; 54 - 55;104 -123; 0.00 b Transthyretin (Prealbumin) 0.11 b
29 - 48 ; 67 - 73 ; 91 - 97 ; 0.19 b
1fba A 3m 1.09702 9 - 32; 73 -107;130 -151;183 -190;227 -301; 0.57 ab Fructose-1,6-bisphosphate Aldolase 0.74 ab
36 - 63;307 -337; 1.00 a
112 -124;160 -179;198 -218; 0.87 a
1fc2 C 1 1.00 a Immunoglobulin Fc
1fc2 D 2 1.60618 347 -441; 0.09 b Immunoglobulin Fc
240 -336; 0.20 b
1fcd A 2 1.34815 4 - 40; 59 -108;256 -324; 0.48 ab Flavocytochrome C Sulfide Dehydrogenase
45 - 49;132 -252;333 -398; 0.53 ab
1fcd C 2 1.48010 87 -172; 1.00 a Flavocytochrome C Sulfide Dehydrogenase
4 - 74; 1.00 a
1fct - 1 1.00 a Immunoglobulin Fc
1fha 2m 1.04246 14 -136; 1.00 a Ferritin 1.00 a
138 -181; 1.00 a
1fia B 1 1.00 a Fis Protein
1fkb 1 0.16 b Fk506 Binding Protein
1fnc 2 1.36457 164 -313; 0.64 ab Ferredoxin
38 -151; 0.13 b
1fod 4 1 1.00 a Immunoglobulin Fc
1frp A 2 1.34048 13 - 48; 74 -198; 0.44 ab Fructose-1,6-bisphosphatase
209 -333; 0.73 ab
1fru B 2m 1.31283 36 - 45; 78 - 94; 0.00 b Fc (Igg) Receptor 0.00 b
6 - 30; 50 - 51; 62 - 70; 0.00 b
1fxi A 1 0.23 ab ,b Ferredoxin I
1fxr A 2m 1.02287 3 - 6; 44 - 62; 0.56 ab Ferredoxin I (4fe-4s) 0.52 ab
16 - 36; 0.45 ab
1gal 3 1.40309 4 - 63;133 -146;171 -173;228 -287;544 -581; 0.50 ab Glucose Oxidase
116 -124;151 -156;185 -213;330 -427;458 -506; 0.69 ab
80 - 94;294 -326;434 -451;512 -513; 0.38 ab
1gau A 1 0.56 ab Erythroid Transcription Factor
1gca 2 1.52568 112 -255;296 -298; 0.71 ab Glucose/Galactose-binding protein
3 -109;258 -292; 0.66 ab
1gdh A 2 1.64753 102 -284; 0.67 ab D-glycerate Dehydrogenase
4 - 95;293 -321; 0.66 ab
1ghs A 4m 1.46334 2 - 53; 85 - 93;123 -129;163 -166;227 -232;271 -273; 0.29 ab 1,3-beta-glucanase 0.67 ab
169 -202 ;244 -255 ; 0.86 a
133 -159 ;205 -220 ; 0.88 a
59 - 76 ;103 -117 ; 1.00 a
1gky 3 1.29146 4 - 31; 82 -121;164 -183; 0.66 ab Guanylate Kinase
34 - 81; 0.32 ab
125 -157; 1.00 a
1glc G 3 1.14671 5 -244;438 -450; 0.57 ab Glycerol Kinase
245 -306;405 -433;466 -470; 0.31 ab
310 -399;479 -493; 0.90 a
1gmf A 2m 1.17423 33 - 64; 98 -116; 0.74 ab Granulocyte-macrophage Colony-stimulat 0.85 a
13 - 28; 74 - 87; 1.00 a
1gof 3 1.30035 160 -529;578 -580; 0.03 b Galactose Oxidase
546 -575;588 -638; 0.00 b
7 -147; 0.00 b
1gox 2 1.08021 33 -155;213 -356; 0.71 ab Glycolate Oxidase
8 - 26;165 -205; 1.00 a
1gp1 A 1 0.57 ab Glutathione Peroxidase
1gph 1 2 1.40801 235 -442; 0.70 ab
2 -226; 0.39 ab
1gpr 2 1.08835 51 -115; 0.00 b Glucose Permease
21 - 47;129 -161; 0.13 b
1gpt 1 0.39 ab Gamma-1-h Thionin
1gtr A 5c 2.05790 341 -342;465-543; 0.00 b Glutaminyl-trna Synthetase
344 -460; 0.79 a,ab
10 - 98;211 -278;303 -313; 0.67 ab
103 -209; 0.00 b
(293 -299;324-338;)
1har 2 1.71241 28 - 83;130 -146; 0.56 ab Hiv-1 Reverse Transcriptase
105 -110;156 -211; 0.68 ab
1hcd 4m 1.16850 75 -104; 0.00 b Hisactophilin 0.00 b
5 - 24;114 -116; 0.00 b
52 - 64; 0.00 b
35 - 46; 0.00 b
1hcg B 2m 1.89298 27 - 38; 0.00 b Blood Coagulation Factor Xa 0.00 b
11 - 22; 0.00 b
1hcn A 2m 2.04699 11 - 29; 59 - 85; 0.00 b Human Chorionic Gonadotropin 0.10 b
35 - 56; 0.33 ab
1hcn B 1 0.00 b Human Chorionic Gonadotropin
1hcr A 1 1.00 a Hin Recombinase
1hdc A 3m 1.18952 8 - 58; 83 - 86;132 -137;175 -182;214 -239; 0.46 ab 3-alpha, 20-beta-hydroxysteroid Dehydr 0.68 ab
101 -111;188 -193; 1.00 a
64 - 78;113 -129; 1.00 a
1hdg O 2 1.47010 2 -145;315 -327; 0.55 ab Holo-d-glyceraldehyde-3-phosphate Dehy
149 -311; 0.43 ab
1hex 4c 1.42190 99 -133;159 -249; 0.64 ab 3-isopropylmalate Dehydrogenase
2 - 96;258 -300; 0.67 ab
305 -344; 1.00 a
(145 -152;)
1hfc 1 0.63 ab Fibroblast Collagenase
1hfi 1 0.00 b Factor H, 15th C-module Pair
1hgj A 2 1.65626 66 - 71;100 -259; 0.25 ab Hemagglutinin
24 - 60; 86 - 89;266 -317; 0.00 b
1hjr A 2m 1.14489 2 - 34; 60 - 67; 98 -151; 0.44 ab Holliday Junction Resolvase 0.62 ab
40 - 58; 77 - 92; 1.00 a
1hks 1 0.76 a,ab Heat Shock Transcription Factor
1hlb 3m 1.30202 34 - 64;111 -129; 1.00 a Hemoglobin 1.00 a
68 -106 ; 1.00 a
14 - 30 ;136 -150 ; 1.00 a
1hle A 2 1.30440 24 -193;291 -357; 0.58 ab Horse Leukocyte Elastase Inhibitor
204 -289; 0.21 ab ,b
1hle B 1 0.00 b Horse Leukocyte Elastase Inhibitor
1hmy 2 1.53590 13 -172;308 -323; 0.58 ab Hhai Dna (Cytosine-c5-)-methyltransfer
192 -302; 0.58 ab
1hne E 2 1.33087 30 -108;235 -242; 0.18 b Human Neutrophil Elastase
20 - 21;135 -230; 0.00 b
1hng A 2 1.99552 3 - 98; 0.00 b Cd2 (Rat)
105 -170; 0.00 b
1hoe 1 0.00 b Alpha-Amylase Inhibitor Hoe-467A
1hre 1 0.00 b Heregulin-alpha
1hrt I 1 0.00 b Alpha-thrombin
1hsl A 2 1.28655 7 - 89;194 -228; 0.69 ab Histidine-binding Protein
92 -181; 0.50 ab
1htm B 1 0.96 a Hemagglutinin Ectodomain
1htp 2 1.33308 8 - 27; 49 - 50; 74 - 79;101 -105; 0.00 b H-protein
29 - 42; 55 - 69; 82 - 92; 0.47 ab
1htr P 1 1.00 a Progastricsin
1huc B 2 1.18125 56 -167;247 -248; 0.88 a Cathepsin B
170 -234; 0.00 b
1hun A 1 0.48 ab Human Macrophage Inflammatory Protein
1huw 1 1.00 a Human Growth Hormone
1hvd 4 1.63625 88 -157;191 -200;232 -245; 1.00 a Annexin V
17 - 85;306 -315; 1.00 a
247 -303; 1.00 a
169 -184;203 -225; 1.00 a
1iae 3c 1.55953 14 - 98; 0.54 ab Astacin
(2 - 3;134 - 135;184 - 198;)
(113 - 115; 164 - 166;)
1iag 2 1.25802 6 -147; 0.62 ab Adamalysin II
158 -193; 0.67 ab
1ifc 1 0.17 b Intestinal Fatty Acid Binding Protein
1igp 1 0.34 ab Inorganic Pyrophosphatase
1ilr 1 2m 1.01122 22 - 33; 65 - 81;120 -143; 0.00 b 0.00 b
11 - 17; 46 - 60; 99 -113;146 -150; 0.00 b
1irk 3 1.59870 1084 -1148;1188 -1204;1236 -1274; 0.92 a Insulin Receptor
996 -1077; 0.25 ab
1163 -1183;1215 -1223; 0.79 a,ab
1isc A 3m 1.37555 87 -113;130 -153;178 -186; 0.71 ab Iron(Iii) Superoxide Dismutase 0.81 a
20 - 26;118 -124;159 -173; 0.73 ab
29 - 75; 1.00 a
1isu A 1 0.60 ab High-potential Iron-sulfur Protein
1ivd 2 1.06443 121 -313;407 -413; 0.00 b Influenza A Subtype N2 Neuraminidase
96 -102;353 -392;418 -449; 0.00 b
1kab 2m 1.10411 10 - 36; 72 - 94; 0.00 b Staphylococcal Nuclease 0.33 ab
39 - 40; 97 -134; 0.77 a,ab
1knb 1 0.00 b Adenovirus Type 5 Fiber Protein (Recep
1knt 1 0.36 ab Collagen Type Vi (Kunitz-type Domain C
1ktx 1 0.00 b Kaliotoxin (Ktx) (Nmr, 11 Structures)
1lba 1 0.61 ab Lysozyme Mutant With Ala 6 Replaced By
1ldm 2 1.37456 22 -160;247 -325; 0.65 ab M=4= Lactate Dehydrogenase Ternary Com
164 -242; 0.90 a
1len A 3m 1.59446 82 -151; 0.00 b Lentil lectin 0.00 b
18 - 46; 0.00 b
63 - 70;159 -178; 0.00 b
1lga A 2 1.26361 54 - 57;151 -273; 0.88 a Lignin Peroxidase
16 - 49; 70 -130;283 -284; 0.94 a
1lis 1 1.00 a Lysin
1lki 2m 1.24684 10 - 11; 76 -142; 0.93 a Leukemia Inhibitory Factor 0.96 a
22 - 59;155 -177; 1.00 a
1loe B 1 Legume lectin
1lpb A 2m 1.89698 48 - 50; 67 - 70; 84 - 89; 0.00 b Lipase 0.00 b
28 - 39; 57 - 58; 0.00 b
1lpb B 2 1.41935 2 -327; 0.64 ab Lipase
338 -448; 0.00 b
1lpe 1 1.00 a Apolipoprotein-E3
1lts A 2m 1.25757 5 - 22; 66 - 88;119 -141; 0.39 ab Heat-labile Enterotoxin (Lt) 0.45 ab
41 - 63; 94 -116;158 -161; 0.54 ab
1lts C 1 1.00 a Heat-labile Enterotoxin (Lt)
1lts D 2 1.20510 26 - 77; 0.55 ab Heat-labile Enterotoxin (Lt)
5 - 22; 82 -100; 0.21 ab ,b
1lyp 1 1.00 a Cap18 (Residues 106 - 137)
1mat 3 1.19648 70 - 78;120 -164;206 -233; 0.61 ab Methionine Aminopeptidase
170 -203;236 -261; 0.00 b
8 - 57; 93 -114; 0.61 ab
1mdc 1 0.16 b Fatty Acid Binding Protein
1min A 3 1.58489 6 - 34;350 -467; 0.75 a,ab Nitrogenase Molybdenum-iron Protein
63 -205; 0.79 a,ab
222 -346; 0.77 a,ab
1mmo B 1 1.00 a Methane Monooxygenase Hydrolase
1mmo G 2m 1.39509 10 - 79; 1.00 a Methane Monooxygenase Hydrolase 1.00 a
87 -143; 1.00 a
1mrg 2 1.30245 2 - 24; 47 -172; 0.68 ab Alpha-momorcharin
27 - 37;183 -235; 0.53 ab
1mrt 1 Cd-7 Metallothionein-2
1msf C 2 1.64219 152 -185; 1.00 a C-myb Dnab inding Domain
100 -133; 1.00 a
1mup 2m 1.07213 25 - 36; 84 -154; 0.28 ab Major Urinary Protein 0.18 b
21 - 22; 45 - 77; 0.00 b
1myl B 1 1.00 a Arc Repressor
21 - 22; 45 - 77; 0.00 b
1myp C 4 1.64602 304 -331;435 -508; 1.00 a Myeloperoxidase
342 -381;533 -562; 0.62 ab
174 -293;522 -528; 1.00 a
128 -144;417 -428; 0.75 a
1nar 2m 1.08866 4 - 56; 79 -115;126 -288; 0.60 ab Narbonin 0.62 ab
60 - 74;117 -122; 0.78 a,ab
1nba A 2m 1.11546 45 - 50; 68 - 84;166 -233; 0.69 ab N-carbamoylsarcosine Amidohydrolase 0.62 ab
54 - 57; 89 -144; 0.27 ab
1nhk L 2c 1.11837 3 - 40; 72 -132; 0.59 ab Nucleoside Diphosphate Kinase
(44 - 67;)
1nip B 2m 1.07038 3 -211;235 -249; 0.73 ab Nitrogenase Iron Protein 0.75 ab
216 -230; 1.00 a
1oct C 2 1.76768 6 - 74; 1.00 a Oct-1 (Pou Domain)
110 -159; 1.00 a
1ofv 2m+ 1.05570 3 - 53; 82 -166; 0.55 ab Flavodoxin 0.55 ab
56 - 69; 0.60 ab
1olb A 3 1.50353 48 -175;424 -475; 0.67 ab Oligo-peptide Binding Protein
264 -417;479 -490; 0.54 ab
14 - 43;191 -259;495 -514; 0.49 ab
1oma 1 0.00 b Omega-aga-IVB
1omp 2 1.27473 7 -111;167 -182;258 -329; 0.62 ab D-maltodextrin-binding Protein
114 -163;186 -245;336 -368; 0.81 a
1ovb 1 0.52 ab Ovotransferrin
1oxy 4 1.46657 383 -399;442 -465;484 -503;552 -566;617 -627; 0.11 b Hemocyanin Subunit II
3 -126;241 -248;517 -520; 0.94 a
161 -217;405 -438;510 -511;538 -539;580 -583; 0.63 ab
266 -375; 0.91 a
1oyb 2m 1.16912 20 -116;163 -191;217 -393; 0.71 ab Old Yellow Enzyme 0.72 ab
124 -160;197 -202; 0.79 a,ab
1paa 1 1.00 a Yeast Transcription Factor Adr1
1pbe 2 1.34712 47 - 99;175 -274;328 -386; 0.54 ab P-hydroxybenzoate Hydroxylase
5 - 40;102 -167;277 -318; 0.59 ab
1pbp 2 1.04766 69 -228;285 -295; Title 0.62 ab
3 - 67;253 -283;298 -314; 0.68 ab
1pcr H 1 0.45 ab Photosynthetic Reaction Center
1pcr L 4m 1.52261 116 -162;225 -250; 1.00 a Photosynthetic Reaction Center 0.96 a
24 -111; 0.90 a
259 -273; 1.00 a
171 -220; 1.00 a
1pda 3 1.635 5 - 98;201 -216; 0.55 ab Phorphobilinogen deaminase
106- 186; 0.60 ab
222- 304; 0.59 ab
1pdc 1 0.00 b Seminal Fluid Protein Pdc-109
1pdg B 3m 1.76428 17 - 62; 97 - 99; 0.00 b Platelet-derived Growth Factor 0.00 b
65 - 74; 85 - 94; 0.00 b
77 - 82; 0.00 b
1pet A 1 1.00 a Tumor Antigen P53
1pfi A 1 1.00 a Major Coat Protein Of Pf1 Virus
1pfk A 2 1.66217 3 -123;258 -302; 0.65 ab Phosphofructokinase
139 -246;309 -318; 0.77 a,ab
1pgb 1 0.37 ab Protein G (B1 Igg-binding Domain)
1pho 1 0.02 b Phosphoporin
1php 3 1.49183 15 -167;386 -389; 0.66 ab 3-phosphoglycerate Kinase (Pgk)
169 -217;243 -261;297 -380; 0.78 a,ab
221 -228;265 -295; 0.35 ab
1pii 2 1.42828 4 -211;229 -237; 0.65 ab N-(5'phosphoribosyl)anthranilate Isomerase
217 -223;242 -445; 0.64 ab
1pk4 2m 2.13793 1 - 2; 78 - 79; 0.00 b Plasminogen Kringle 4 0.00 b
62 - 74; 0.00 b
1pkn 3 1.51134 45 -112;222 -387; 0.74 ab Pyruvate Kinase
17 - 30;390 -528; 0.76 a,ab
138 -209; 0.00 b
1plq 2 1.38791 135 -250; 0.25 ab Proliferating Cell Nuclear Antigen
2 -117; 0.25 ab ,b
1pmy 2m 1.11493 2 - 92; 0.00 b Pseudoazurin (Cupredoxin) 0.28 ab
99 -120; 1.00 a
1pnt 1 0.74 ab Tyrosine Phosphatase
1poa 1 0.86 a Phospholipase A2
1poc 2 1.23579 40 - 59; 95 -129; 0.00 b Phospholipase A2
25 - 35; 61 - 89; 1.00 a
1pox A 2 1.28202 10 -178;373 -543; 0.67 ab Pyruvate Oxidase
199 -364;564 -588; 0.78 a,ab
1ppb L 1 1.00 a Alpha-thrombin
1ppn 1 0.56 ab Papain
1ppt - 1 1.00 a Avian Pancreatic Polypeptide
1prc C 4 1.60197 102 -136;262 -309; 1.00 a Photosynthetic Reaction Center
8 - 34;244 -247; 0.78 a,ab
172 -239; 1.00 a
52 - 81; 1.00 a
1prs 2+ 1.37928 4 - 86;119 -122; 0.26 ab Development-specific Protein S
93 -113;131 -173; 0.00 b
1prt A 2 1.00697 6 - 11; 23 - 54; 97 -136;191 -227; 0.52 ab Pertussis Toxin
15 - 21; 57 - 92;141 -162; 0.51 ab
1prt B 2 1.50457 27 - 92; 0.39 ab Pertussis Toxin
100 -190; 0.23 ab ,b
1prt D 1 0.16 b Pertussis Toxin
1prt F 1 0.26 ab Pertussis Toxin
1psm 1 1.00 a Spam-h1
1psp A 2m 2.14904 6 - 47; 0.71 ab Pancreatic Spasmolytic Polypeptide 0.67 ab
75 - 96; 0.60 ab
1ptx 1 0.32 ab Scorpion Toxin Ii
1pxt B 3c 1.07878 36 - 72; 88 -158;228 -287; 0.48 ab Peroxisomal 3-ketoacyl-coa Thiolase
202 -220;300 -415; 0.66 ab
(76 -80;288 -294;)
1pya B 3 1.22776 152 -202;236 -261; 0.00 b Pyruvoyl-dependent Histidine Decarboxy
99 -102;124 -134;278 -297; 1.00 a
108 -122;207 -231; 0.71 ab
1pyp 2m 1.29328 120 -229; 0.62 ab Inorganic Pyrophosphatase 0.53 ab
4 - 19; 0.00 b
1rbl M 1 0.52 ab Ribulose 1,5 Bisphosphate CarboxylaseO
1rcb 1 0.93 a Interleukin 4
1rec 2 1.31479 102 -194; 0.93 a Recoverin
10 - 94; 0.90 a
1ret 1 1.00 a Gamma Delta Resolvase
1rfb A 1 1.00 a Interferon Gamma
1rib A 2 1.12735 34 -149;207 -253;269 -318; 1.00 a Protein R2 Of Ribonucleotide Reductase
153 -205;259 -267; 0.82 a
1rmi 1 1.00 a Interferon-beta
1rop A 1 1.00 a Rop
1rpa 2 1.24557 2 -141;220 -340; 0.70 ab Prostatic Acid Phosphatase
143 -215; 1.00 a
1rsy 2 1.54351 179 -194;223 -246; 0.00 b Synaptotagmin I
144 -166;205 -212;256 -261; 0.00 b
1rtp 1 2m 1.15612 40 - 64; 79 -107; 0.90 a Alpha-parvalbumin 0.94 a
2 - 32; 66 - 70; 1.00 a
1rva A 2m 1.11854 3 - 17; 37 -241; 0.55 ab Eco Rv Endonuclease 0.53 ab
22 - 32; 0.00 b
1s01 1 0.64 ab Subtilisin BPN'
1sac A 1 0.08 b Serum Amyloid P Component
1sbp 2 1.28993 97 -217;279 -308; 0.72 ab Sulfate-binding Protein
2 - 94;222 -270; 0.72 ab
1scm A 1 1.00 a Myosin
1scm B 2 1.69265 88 -148; 0.85 a Myosin
14 - 77; 1.00 a
1scm C 2 1.72643 83 -149; 0.83 a Myosin
8 - 76; 0.90 a
1scu A 2 1.42113 9 -135; 0.58 ab Succinyl-coa Synthetase
144 -287; 0.64 ab
1scu B 3 1.90334 240 -387; 0.73 ab Succinyl-coa Synthetase
5 - 15;104 -231; 0.56 ab
22 -100; 0.54 ab
1scy 1 0.56 ab Scyllatoxin (Leiurotoxin I)
1ses A 3 1.28122 4 - 21;118 -123;186 -384; 0.43 ab Seryl-trna Synthetase
136 -182;386 -417; 0.92 a
27 - 98; 1.00 a
1smr A 3 1.38554 191 -306; 0.30 ab Renin
13 -142; 0.15 b
2 - 9;150 -183;309 -325; 0.00 b
1spf 1 0.00 a Pulmonary Surfactant-associated Polype
1srg A 1 0.00 b Streptavidin
1tab I 1 0.00 b Trypsin Complex With Bowman-Birk Inhib
1tad A 2 1.36656 28 - 53;181 -341; 0.62 ab Transducin-alpha
59 -172; 1.00 a
1tap 1 0.40 ab Factor Xa Inhibitor
1tca 2 1.20842 13 -131;179 -287; 0.71 ab Lipase (Triacylglycerol Hydrolase)
142 -169;309 -314; 0.82 a
1tfi 1 0.00 b Transcriptional Elongation Factor Sii
1tgs I 1 0.50 ab Trypsinogen
1thv 2m 1.19091 2 -126;180 -203; 0.00 b Thaumatin Isoform A 0.22 ab ,b
130 -176; 1.00 a
1tie 1 0.00 b Erythrina Trypsin Inhibitor
1tlk 1 0.00 b Telokin
1tml 2 1.22750 40 -256; 0.74 ab Endo-1,4-beta-d-glucanase
12 - 32;276 -284; 1.00 a
1tnr A 1 0.00 b Tumor Necrosis Factor Receptor P55
1tnr R 3 2.37854 19 - 72; 0.00 b Tumor Necrosis Factor Receptor P55
123 -152; 0.00 b
83 -116; 0.00 b
1tph 1 2m 1.09175 6 -127;160 -164;206 -244; 0.59 ab 0.70 ab
139 -151;178 -203; 1.00 a
1tpl A 4+ 1.58872 21 - 46;312 -455; 0.75 a,ab Tyrosine Phenol-lyase
92 -214;250 -286; 0.60 ab
58 - 88;296 -308; 1.00 a
218 -246; 1.00 a
1tpn 2m 1.42838 20 - 45; 0.00 b Tissue-type Plasminogen Activator 0.00 b
6 - 15; 0.00 b
1trb 2 1.55792 3 -116;245 -313; 0.48 ab Thioredoxin Reductase
122 -241; 0.45 ab
1trk A 4 1.62656 6 -300; 0.80 a Transketolase
356 -542;591 -596; 0.70 ab
547 -587;599 -667; 0.67 ab
302 -335; 1.00 a
1trz B 1 1.00 a Insulin (T3r3)
1tss A 2 1.31020 18 - 98;119 -124;181 -182; 0.00 b Toxic Shock Syndrome Toxin 1
4 - 14;102 -110;126 -167;186 -194; 0.47 ab
1tvs 1 1.00 a Transactivator Protein
1tys 1 0.53 ab Thymidylate Synthase
1ula 2 1.22058 116 -218;234 -278; 0.55 ab Purine Nucleoside Phosphorylase
8 -113;222 -230; 0.60 ab
1vaa A 2 1.49617 3 -179; 0.55 ab Mhc Class I H-2k==b==
186 -272; 0.00 b
1vil 2m 1.10373 46 -109; 0.59 ab Villin 0.45 ab
20 - 40;115 -117; 0.00 b
1vmo A 1 0.00 b Vitelline Membrane Outer Layer Protein
1was 1 1.00 a Bacterial Aspartate Receptor
1wsy A 2m 1.08418 2 - 24; 48 - 51; 78 -233; 0.69 ab Tryptophan Synthase 0.79 a,ab
30 - 42; 63 - 73;236 -264; 1.00 a
1wsy B 2 1.27986 59 - 77;207 -390; 0.59 ab Tryptophan Synthase
22 - 51; 88 -203; 0.82 a
1xnb 1 0.08 b Xylanase (Endo-1,4-beta-xylanase)
1ypt A 1 0.63 ab Protein-tyrosine Phosphatase
1ytb A 2 1.37170 66 -165; 0.37 ab Tatab ox Binding Protein
172 -236; 0.59 ab
1zaa C 2 1.41278 35 - 82; 0.71 ab Zif268 Immediate Early Gene
5 - 30; 0.75 ab
2abk 3 1.43547 3 - 16;139 -185; 1.00 a
29 - 54;108 -130; 1.00 a
61 - 98; 1.00 a
2ach B 1 0.00 b Alpha1 Antichymotrypsin
2ak3 A 2c 1.17790 7 -113;164 -211; 0.79 a,ab Adenylate Kinase Isoenzyme-3
(116 -137;)
2alp 2 1.07851 15B-120K;231 -242; 0.13 b Alpha-lytic Protease
135 -230; 0.00 b
2atc B 1 0.60 ab Aspartate Carbamoyltransferase
2ayh 1 0.04 b 1,3-1,4-beta-d-glucan 4 Glucanohydrola
2aza A 1 0.26 ab Azurin
2bbk H 3 1.41682 69 -203; 0.00 b Methylamine Dehydrogenase
219 -320; 0.09 b
33 - 64;322 -368; 0.00 b
2bbv A 2m 1.08002 91 -323; 0.08 b Black Beetle Virus Capsid Protein 0.22 ab ,b
61 - 71;334 -352; 0.92 a
2bds 1 0.00 b BDS-I
2bop A 1 0.44 ab Bovine Papillomavirus-1 E2
2bpa 1 2 1.32643 10 -161;235 -290;402 -423; 0.28 ab
192 -221;301 -383; 0.84 a
2bpa 2 1 0.00 b Bacteriophage Phix174 Capsid Proteins
2bpa 3 1 Bacteriophage Phix174 Capsid Proteins
2btf P 1 0.45 ab Beta-actin-profilin Complex
2cas 2c 1.06691 49 -399;455 -580; 0.13 b Canine Parvovirus Empty Capsid
(415-430;)
2cba 1 0.18 b Carbonic Anhydrase II
2cbh 1 0.00 b C-terminal Domain Of Cellobiohydrolase
2ccy A 1 1.00 a Cytochrome c'
2cdv 2m 1.31200 9 - 20; 65 - 98; 0.79 a,ab Cytochrome c=3= 0.73 ab
30 - 41; 0.50 ab
2chs A 2m 1.08196 3 - 11; 42 - 49; 73 -108; 0.00 b Chorismate Mutase 0.42 ab
17 - 35; 60 - 64; 1.00 a
2cnd 2 1.29636 119 -269; 0.52 ab Nadh-dependent Nitrate Reductase
13 -116; 0.14 b
2cp4 4 1.54823 53 - 95;298 -327; 0.45 ab Cytochrome P450cam
38 - 42;147 -153;174 -185;235 -264;382 -405; 0.81 a
121 -142;157 -167;268 -291;360 -377; 1.00 a
108 -119;193 -232; 0.91 a
2cpl 1 0.29 ab Cyclophilin A
2crd 1 0.62 ab Charybdotoxin
2cro 1 1.00 a 434 Cro Protein
2ctc 1 0.70 ab Carboxypeptidase A
2cts 4 1.44416 57 -116;209 -234;328 -340;375 -384; 0.93 a Citrate Synthase - (CoA, Citrate)
122 -194;243 -269;393 -414; 1.00 a
277 -310;345 -363; 1.00 a
38 - 42;427 -434; 1.00 a
2dnj A 2 1.19628 2 - 11; 34 - 40; 64 -232;255 -258; 0.30 ab Deoxyribonuclease I
13 - 30; 46 - 55;235 -249; 1.00 a
2dri 2 1.48774 105 -234;266 -268; 0.70 ab D-ribose-binding Protein
3 -103;237 -263; 0.63 ab
2drp A 2m 1.95667 104 -133; 0.55 ab Tramtrack Protein 0.63 ab
141 -163; 0.73 ab
2ebn 2+ 1.16361 11 - 17; 41 -223;245 -249; 0.46 ab Endo-beta-n-acetylglucosaminidase F1
29 - 31;232 -241;262 -280; 0.79 a,ab
2ech 1 0.00 b Echistatin
2end 1 1.00 a Endonuclease V
2gda 1 0.83 a Glucocorticoid Receptor
2gdm 2m 1.15486 22 - 36;107 -122; 1.00 a Leghemoglobin (Oxy) 1.00 a
5 - 19; 58 - 81; 1.00 a
2glt 3 1.70479 3 -121;301 -313;
0.52 ab
208 -294;
0.41 ab
138 -199;
0.53 ab
2gst A 2 1.33638 2 - 82;191 -197; 0.61 ab Glutathione S-transferase
90 -114;130 -188; 1.00 a
2hbg 2 1.13809 24 - 71;103 -118; 1.00 a Hemoglobin
4 - 18; 76 - 89;124 -145; 1.00 a
2hhm A 2 1.10547 6 -141;190 -259; 0.57 ab Human Inositol Monophosphatase Dimer C
154 -185; 0.70 ab
2hip A 1 0.00 b High Potential Iron Sulfur Protein
2hmz A 1 1.00 a Hemerythrin
2hnq 2+ 1.26129 69 -214; 0.29 ab Protein-tyrosine Phosphatase 1b
6 - 26;220 -278; 1.00 a
2hnt E 1 0.50 ab Gamma-thrombin
2hpd A 4 1.40306 112 -158;251 -324;403 -450; 0.87 a Cytochrome P450 (Bm-3)
25 - 69;330 -367; 0.46 ab
94 -103;198 -238; 1.00 a
73 - 82;172 -189; 1.00 a
2hpe A 1 0.13 b Hiv-2 Protease
2hsp 2m 1.76276 41 - 55; 0.00 b Phospholipase C-gamma (Sh3 Domain) 0.00 b
9 - 31; 0.00 b
2ihl 2 1.27144 43 - 98; 0.56 ab Lysozyme
5 - 36;109 -114; 1.00 a
2lgs A 3c 1.29888 104 -135;189 -455; 0.70 ab Glutamine Synthetase
2 - 92; 0.31 ab
(137 - 152;459 - 465;)
2liv 2 1.56353 3 -116;259 -316; 0.72 ab Leu/Ile/Val-binding protein
124 -248;330 -342; 0.62 ab
2mad L 2c 1.41227 32 - 52; 76 -122; 0.00 b Methylamine Dehydrogenase
(57 - 74;126 -129;)
2mev 1 1 0.14 b Mengo Encephalomyocarditis Virus Coat
2mge 2m 1.06857 4 - 77;101 -118; 1.00 a Myoglobin 1.00 a
83 - 95;125 -149; 1.00 a
2mnr 2 1.19044 22 - 29;123 -338; 0.69 ab Mandelate Racemase
6 - 16; 32 -118;351 -357; 0.66 ab
2mrb 1 Cd-7 Metallothionein-2a
2ms2 A 2m 1.18327 7 - 93; 0.00 b Ms2 Virus (Bacteriophage) 0.26 ab
98 -123; 1.00 a
2msb A 2 1.15422 112 -152;214 -220; 0.54 ab Mannose-binding Protein A
156 -208; 0.00 b
2mta C 1 1.00 a Methylamine Dehydrogenase
2ohx A 3 1.59449 175 -316; 0.67 ab Alcohol Dehydrogenase
35 - 91;149 -169;324 -373; 0.44 ab
7 - 28;130 -137; 0.00 b
2pcd A 2 1.19707 17 -109;126 -145;171 -188; 0.15 b Protocatechuate 3,4-dioxygenase
114 -122;149 -167; 0.69 ab
2pde 1 1.00 a Dihydrolipoamide Acetyltransferase
2pgd 3 1.56958 5 -175; 0.68 ab 6-phosphogluconate Dehydrogenase
178 -291;315 -348;392 -433; 1.00 a
354 -381; 1.00 a
2phy 1 0.46 ab Photoactive Yellow Protein
2pia 3 1.91805 113 -223; 0.53 ab Phthalate Dioxygenase Reductase
238 -319; 0.21 ab ,b
9 - 98; 0.15 b
2pmg A 4 1.67964 4 -188; 0.52 ab Phosphoglucomutase
305 -382;408 -419;540 -549; 0.66 ab
192 -303;390 -403; 0.76 a,ab
421 -537; 0.34 ab
2por 1 0.09 b Porin
2reb 3 1.59416 39 - 40; 56 - 94;115 -144;166 -218; 0.66 ab Rec A Protein
270 -327; 0.76 a,ab
45 - 50;101 -106;221 -268; 0.25 a,ab
2rn2 1 0.55 ab Ribonuclease H
2rsl B 1 0.69 ab Gamma Delta Resolvase
2rsp B 1 0.15 b Rous Sarcoma Virus Protease
2sas 2m 1.14916 4 -114;158 -170; 0.96 a Sarcoplasmic Calcium-binding Protein 0.96 a
124 -149; 1.00 a
2scp A 2 1.19726 25 - 59; 90 -159; 0.95 a Sarcoplasmic Calcium-binding Protein
2 - 23; 70 - 82; 0.86 a
2sil 1 0.07 b Sialidase (Neuraminidase)
2sn3 1 0.40 ab Scorpion Neurotoxin
2snv 2 1.31782 188 -263; 0.00 b Sindbis Virus Capsid Protein
115 -168; 0.00 b
2stv 2m 1.35497 43 - 46; 83 -135;170 -177; 0.21 ab ,b Satellite Tobacco Necrosis Virus 0.10 b
26 - 37; 64 - 77;142 -150;183 -193; 0.00 b
2tbv A 2 1.49997 274 -376; 0.00 b Tomato Bushy Stunt Virus
106 -264; 0.07 b
2tgi 2 1.49854 21 - 40; 83 -106; 0.14 b Transforming Growth Factor-beta
4 - 18; 43 - 80;109 -112; 0.53 ab
2tmd A 3 1.72570 13 -336; 0.66 ab Trimethylamine Dehydrogenase
350 -357;428 -431;489 -646; 0.48 ab
391 -418;442 -485;649 -693; 0.73 ab
2tmv P 2c 1.35202 20 - 50; 76 -134; 0.63 ab Intact Tobacco Mosaic Virus
(10 - 18; 68 - 70;138 -148;)
2tpr A 3 1.62000 50 -114;161 -288; 0.66 ab Trypanothione Reductase
362 -477; 0.47 ab
2 - 34;119 -157;321 -348; 0.37 ab
2ts1 2 1.24196 2 -220; 0.77 a,ab Tyrosyl-transfer RNA Synthetase
248 -318; 1.00 a
2zta A 1 1.00 a GCN4 Leucine Zipper
3aah A 7 1.98217 26 - 27;392 -405;444 -502; 0.00 b Methanol Dehydrogenase
2 - 9;112 -193; 0.17 b
305 -363; 0.00 b
375 -378;407 -433;534 -552; 0.33 ab
41 - 47;512 -526;565 -570; 0.00 b
241 -289; 0.00 b
59 - 90; 0.00 b
3aah B 1 1.00 a Methanol Dehydrogenase
3bcl 2 1.18536 4 - 68;122 -127;244 -279;300 -357; 0.15 b Bacteriochlorophyll-a Protein
71 -117;136 -229;284 -290; 0.35 ab
3cd4 2 1.28261 108 -177; Cd4 0.00 b (N-terminal Fragment Consisting Of
2 -102; 0.00 b
3chy 1 0.73 ab CheY
3cla 2 1.23874 32 - 67; 90 -214; 0.51 ab Type III Chloramphenicol Acetyltransfe
8 - 27; 75 - 86; 0.43 ab
3cox 4 1.64646 11 - 40;232 -287;470 -472; 0.28 ab Cholesterol Oxidase
162 -204;324 -380;407 -424; 0.62 ab
96 -109;290 -303;388 -399;444 -445; 0.41 ab
128 -155;487 -504; 1.00 a
3dfr 2+ 1.24410 38 -105; 0.58 ab Dihydrofolate Reductase
2 - 32;112 -160; 0.20 ab ,b
3ebx 2m 1.15942 23 - 49; 0.00 b Erabutoxin b 0.00 b
2 - 15; 0.00 b
3egf 1 0.00 b Epidermal Growth Factor (Egf)
3gap A 2 1.33272 9 -134; 0.63 ab Catabolite Gene Activator Protein
139 -189; 1.00 a
3gly 2 1.23122 51 -237; 0.90 a Glucoamylase-471 (1,4-alpha-d-glucan G
2 - 19;247 -429; 0.90 a
3hhr C 2 1.67892 35 -125;163 -166; 0.10 b Human Growth Hormone
137 -160;174 -234; 0.00 b
3hsc 4 1.59087 38 -135;
0.52 ab
7 - 28;141 -182;368 -379;
0.53 ab
193 -225;315 -353;
0.38 ab
230 -312;
0.74 ab
3il8 1 0.47 ab Interleukin 8
3mdd A 3c 1.45014 92 -233; 0.37 ab Medium Chain Acyl-CoA Dehydrogenase
18 - 90;244 -278;292 -392; 1.00 a
(282 -287;)
3mon A 1 0.00 b Monellin
3sdh A 2m 1.11478 3 - 8; 87 -111;129 -145; 1.00 a Hemoglobin I (Homodimer) 1.00 a
12 - 82;115 -124; 1.00 a
3sgb I 1 0.53 ab Proteinase B From Streptomyces Griseus
4blm A 2 1.30377 32 - 67;180 -195;230 -290; 0.44 ab Beta-Lactamase (Penicillinase)
72 -154;201 -212; 0.93 a
4cpa I 1 0.00 b Carboxypeptidase A=alpha= (Cox)
4enl 2 1.20405 129 -425; 0.72 ab Enolase (2-phospho-D-glycerate Hydrola
4 -125; 0.68 ab
4fxn 1 0.62 ab Flavodoxin (Semiquinone Form)
4gcr 2+ 1.42345 2 - 84; 0.00 b Gammab Crystallin
88 -158; 0.13 b
4gpb 3 1.45667 81 - 85;135 -159;191 -247;290 -481;813 -823; 0.63 ab Glycogen Phosphorylase B
167 -178;497 -805; 0.81 a
21 - 77; 95 -123; 1.00 a
4rhv 1 2 1.37313 67 -255; 0.14 b
18 - 57; 0.00 b
4rhv 2 1 0.09 b Rhinovirus 14 (HRV14)
4rhv 3 0* 43-222; 0.18 b Rhinovirus 14 (HRV14)
4rhv 4 1 1.00 a Rhinovirus 14 (HRV14)
4sbv A 3 1.24539 85 - 90;130 -186;223 -229; 0.16 b Southern Bean Mosaic Virus Coat Protein
98 -104;197 -219; 0.90 a
67 - 80;109 -121;237 -250; 0.00 b
4sgb I 1 0.00 b Serine Proteinase B
4tgf 2m 2.25260 38 - 46; 0.00 b Des-val==1==,Val==2==-transforming Gro 0.00 b
20 - 33; 0.00 b
4xia A 2c 1.15259 10 -337;379 -390; 0.82 a D-Xylose Isomerase
(354 -372;)
5fd1 1 0.67 ab Ferredoxin
5p21 2m 1.02065 69 -164; 0.74 ab c-H-ras p21 Protein 0.56 ab
2 - 58; 0.26 ab
6fab L 2 1.90025 4 -106; 0.00 b Antigen-binding Fragment Of The Murine
114 -210; 0.15 b
7api B 1 0.00 b Modified Alpha=1=-Antitrypsin
7ccp 3 1.32040 36 - 39;179 -240; 0.63 ab Cytochrome C Peroxidase
16 - 32; 43 -118; 1.00 a
151 -172;242 -271; 1.00 a
7pti 1 0.36 ab Bovine Pancreatic Trypsin Inhibitor
7rsa 2 1.27920 4 - 12; 51 - 74;106 -123; 0.41 ab Ribonuclease A
25 - 47; 79 -104; 0.28 ab
7znf 1 0.69 ab Zinc-finger (Zfy-swap)
8abp 3+ 1.46153 135 -141;169 -253;287 -300; 0.52 ab L-Arabinose-binding Protein
3 -108;256 -283; 0.64 ab
110 -128;146 -162; 1.00 a
8acn 3 1.52287 18 - 98;121 -208;236 -314;517 -518; 0.64 ab Aconitase
552 -751; 0.53 ab
109 -119;217 -228;321 -495; 0.70 ab
8atc A 3 1.40255 135 -290; 0.66 ab Aspartate Carbamoyltransferase
43 -129; 0.58 ab
17 - 32;292 -304; 1.00 a
8cat A 2 1.32035 10 - 16; 77 -147;213 -237;259 -364; 0.38 ab Catalase
160 -198;246 -255;440 -499; 1.00 a
8fab B 2 1.78801 3 -119; 0.00 b Fab Fragment From Human Immunoglobulin
128 -218; 0.08 b
8rxn A 1 0.00 b Rubredoxin
8tln E 2 1.45014 4 -151; Thermolysin Complexed With Val-lys Dip 0.46 ab
159 -312; 0.89 a
9rnt 1 0.36 ab Ribonuclease T=1= Complex With Ca==2+=
9rub A 4+ 1.67664 143 -164;189 -191;227 -286;305 -392; 0.61 ab Ribulose-1,5-bisphosphate Carboxylase
14 -127;302 -303; 0.44 ab
173 -181;198 -218; 0.86 a
403 -439; 1.00 a
9wga A 2 1.51234 103 -160; 0.50 ab Wheat Germ Agglutinin (Isolectin 2)
17 - 74; 0.50 ab
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Ch. : Chain identifier
D : disjoint factor (for details see Sowdhamini & Blundell, 1995).
f
Helix content gives a measure of the secondary structural content. This is
the ratio between the number of residues in helices to the number of residues
in both helices and extended strands.
a: refers to helix-rich domains (helix content more than 0.80)
b: refers to strand-rich domains (helix content less than 0.20)
ab: refers to domains composed of helices and strands
(helix content with intermediate values)
m The domains corresponding to one of the clusters is not structurally compact; clusters are merged and considered as single-domain fold.
c One of the clusters marked within brackets corresponds to a domain less than 25 residues; this small cluster is ignored.
* The domain boundaries suggested by DIAL was quite different from graphical inspection; hence user-defined boundaries are used.
+ The domain boundaries suggested by DIAL have been altered slightly for structure comparison by SEA.
(a) Residues 11-31 have been included in the second domain of 1apm (E chain).
(b) Residues 161-168 are considered part of the first domain of 1ars.
(c) 1cde is considered as a single domain fold.
(d) Residues 135 -295 (first domain) of 1chr (A chain) are considered part of the third domain.
(e) Residues 3-120 and 141-166 of 1ofv are alone considered as a single domain fold.
(f) Residues 119-122 of domain 1 of 1prs are considered part of the second domain.
(g) The second (residues 92 to 214 and 250 to 286) and fourth domains (residues 218 to 246) in 1tpl (A chain) are considered part of the third domain.
(h) 2ebn, 2hnq and 3dfr are considered as a single domain fold.
(i) Residues 159-169 are also considered part of the second domain in 4gcr.
(j) The third domain (residues 110-128 and 146-162) of 8abp is considered part of the first domain.
(k) Domains 3 and 4 of 9rub (A chain) are considered part of the first domain.
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