Distilled from Pedro's Research Tools, an excellent all purpose index for molecular biology, the following represent a sample overview of the analysis tools available on the WWW.

• AMAS - Analysis of Protein Multiple Sequence Alignments at U. Oxford, UK

• BEAUTY - BLAST Enhanced Alignment Utility (see Documentation) at Baylor College of Medicine

• BLASTPAT - BLAST-based Pattern Database Search (see Documentation) at Baylor College of Medicine

• BioSCAN - Biological Sequence Comparative Analysis at U. North Caroline

• HPT - Protein Sequence Pattern Recognition in the PIR Database and HPT-Homology at MIPS, Germany

• MOTIF - Search Patterns in Protein Sequences at GenomeNet, Japan Motif at GenomeNet, Japan w/ search from Iowa State

• PatScan - Look for Pattern Matches in DNA or Protein Sequences at Argonne National Laboratory

• ProfileScan - Search a Sequence Against a Library of Profiles generated from the Prosite database at ISREC, Switzerland

• PROPSEARCH - Protein Sequence Search for Structural Homology Based on Aminoacid Properties at EMBL-Heidelberg

• ZPRED - MultPredict Secondary Structure of Multiply Aligned Protein Sequences at Ludwig Institute for Cancer Research

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