PROCHECK log

PROCHECK log file

Program clean

CLEAN - Clean-up program
------------------------
 


 Clean-up program CLEAN - Written by David Keith Smith, 1989.
                          Amended by Roman Laskowski, 1992.


 Enter filename containing coordinates of structure
   (for file containing ensemble of NMR structures enter @filename;
    for set of separate PDB files to be processed, enter %filelist,
    where filelist contains a list of PDB files to be cleaned up)
 "PLP": unknown amino acid code
 "HOH": unknown amino acid code
 "PLP": unknown amino acid code
 "HOH": unknown amino acid code
 Chain break between  401 (A 410 ) and  402 (B   3 )
 Average value of CA-N-C-CB angle is  32.86
 Standard deviation is                 3.19
 Total number of residues changed and total number of residues:
     ALA     0    72
     CYS     0    10
     ASP     0    40
     GLU     0    46
     PHE     0    32
     GLY     0    60
     HIS     0    18
     ILE     0    48
     LYS     0    56
     LEU     0    64
     MET     0    26
     ASN     0    34
     PRO     0    34
     GLN     0    30
     ARG     0    48
     SER     0    58
     THR     0    34
     VAL     0    48
     TRP     0    14
     TYR     0    30
 * Program completed

Program secstr

 
SECSTR - Secondary structure assignment
---------------------------------------
 

 Secondary structure calculation program - copyright by David Keith Smith, 1989

 Amended by R A Laskowski, 1992

 Enter filename containing coordinates of structure
   (for file containing ensemble of NMR structures enter @filename;
    for set of separate PDB files to be processed, enter %filelist,
    where filelist contains a list of PDB files to be cleaned up)
 PLP unknown amino acid code                                                    
  
 HOH unknown amino acid code                                                    
  
 PLP unknown amino acid code                                                    
  
 HOH unknown amino acid code                                                    
  
 chain break between  401(A 410 ) and  402(B   3 )                              
  
 third (+) Hbond (N-C)  157   154 energy  -0.52 abandoned                       
  
 third (+) Hbond (N-C)  288   283 energy  -1.09 abandoned                       
  
 third (+) Hbond (N-C)  462   459 energy  -0.55 abandoned                       
  
 third (+) Hbond (N-C)  689   684 energy  -0.97 abandoned                       
  
 third (+) Hbond (N-C)  771   766 energy  -0.66 abandoned                       
  
 number of hydrogen bonds is   576                                              
  
 * Program completed

Program nb

 
Check of non-bonded contacts
----------------------------
 

Neighbouring Contact Locator - By David Jones, August 1990

Program is configured for 50000 atoms and 10000 residues.

Enter the name of original coordinates file
Input file name pdb8aat.new
Output file name pdb8aat.nb
Processing : pdb8aat.new
Residue     1 is SER A    3-  
Residue     2 is SER A    4-  
Residue     3 is TRP A    5-  
Residue     4 is TRP A    6-  
Residue     5 is SER A    7-  
Residue     6 is HIS A    8-  
Residue     7 is VAL A    9-  
Residue     8 is GLU A   10-  
Residue     9 is MET A   11-  
Residue    10 is GLY A   12-  
Residue    11 is PRO A   13-  
Residue    12 is PRO A   14-  
Residue    13 is ASP A   15-  
Residue    14 is PRO A   16-  
Residue    15 is ILE A   17-  
Residue    16 is LEU A   18-  
Residue    17 is GLY A   19-  
Residue    18 is VAL A   20-  
Residue    19 is THR A   21-  
Residue    20 is GLU A   22-  
Residue    21 is ALA A   23-  
Residue    22 is PHE A   24-  
Residue    23 is LYS A   25-  
Residue    24 is ARG A   26-  
Residue    25 is ASP A   27-  
Residue    26 is THR A   28-  
Residue    27 is ASN A   29-  
Residue    28 is SER A   30-  
Residue    29 is LYS A   31-  
Residue    30 is LYS A   32-  
Residue    31 is MET A   33-  
Residue    32 is ASN A   34-  
Residue    33 is LEU A   35-  
Residue    34 is GLY A   36-  
Residue    35 is VAL A   37-  
Residue    36 is GLY A   38-  
Residue    37 is ALA A   39-  
Residue    38 is TYR A   40-  
Residue    39 is ARG A   41-  
Residue    40 is ASP A   42-  
Residue    41 is ASP A   43-  
Residue    42 is ASN A   44-  
Residue    43 is GLY A   45-  
Residue    44 is LYS A   46-  
Residue    45 is PRO A   47-  
Residue    46 is TYR A   48-  
Residue    47 is VAL A   49-  
Residue    48 is LEU A   50-  
Residue    49 is ASN A   51-  
Residue    50 is CYS A   52-  
Residue    51 is VAL A   53-  
Residue    52 is ARG A   54-  
Residue    53 is LYS A   55-  
Residue    54 is ALA A   56-  
Residue    55 is GLU A   57-  
Residue    56 is ALA A   58-  
Residue    57 is MET A   59-  
Residue    58 is ILE A   60-  
Residue    59 is ALA A   61-  
Residue    60 is ALA A   62-  
Residue    61 is LYS A   63-  
Residue    62 is LYS A   64-  
Residue    63 is MET A   66-  
Residue    64 is ASP A   67-  
Residue    65 is LYS A   68-  
Residue    66 is GLU A   69-  
Residue    67 is TYR A   70-  
Residue    68 is LEU A   71-  
Residue    69 is PRO A   72-  
Residue    70 is ILE A   73-  
Residue    71 is ALA A   74-  
Residue    72 is GLY A   75-  
Residue    73 is LEU A   76-  
Residue    74 is ALA A   77-  
Residue    75 is ASP A   78-  
Residue    76 is PHE A   79-  
Residue    77 is THR A   80-  
Residue    78 is ARG A   81-  
Residue    79 is ALA A   82-  
Residue    80 is SER A   83-  
Residue    81 is ALA A   84-  
Residue    82 is GLU A   85-  
Residue    83 is LEU A   86-  
Residue    84 is ALA A   87-  
Residue    85 is LEU A   88-  
Residue    86 is GLY A   89-  
Residue    87 is GLU A   90-  
Residue    88 is ASN A   91-  
Residue    89 is SER A   92-  
Residue    90 is GLU A   93-  
Residue    91 is ALA A   94-  
Residue    92 is PHE A   95-  
Residue    93 is LYS A   96-  
Residue    94 is SER A   97-  
Residue    95 is GLY A   98-  
Residue    96 is ARG A   99-  
Residue    97 is TYR A  100-  
Residue    98 is VAL A  101-  
Residue    99 is THR A  102-  
Residue   100 is VAL A  103-  
Residue   101 is GLN A  104-  
Residue   102 is GLY A  105-  
Residue   103 is ILE A  106-  
Residue   104 is SER A  107-  
Residue   105 is GLY A  108-  
Residue   106 is THR A  109-  
Residue   107 is GLY A  110-  
Residue   108 is SER A  111-  
Residue   109 is LEU A  112-  
Residue   110 is ARG A  113-  
Residue   111 is VAL A  114-  
Residue   112 is GLY A  115-  
Residue   113 is ALA A  116-  
Residue   114 is ASN A  117-  
Residue   115 is PHE A  118-  
Residue   116 is LEU A  119-  
Residue   117 is GLN A  120-  
Residue   118 is ARG A  121-  
Residue   119 is PHE A  122-  
Residue   120 is PHE A  123-  
Residue   121 is LYS A  124-  
Residue   122 is PHE A  125-  
Residue   123 is SER A  126-  
Residue   124 is ARG A  129-  
Residue   125 is ASP A  130-  
Residue   126 is VAL A  133-  
Residue   127 is TYR A  134-  
Residue   128 is LEU A  135-  
Residue   129 is PRO A  136-  
Residue   130 is LYS A  137-  
Residue   131 is PRO A  138-  
Residue   132 is SER A  139-  
Residue   133 is TRP A  140-  
Residue   134 is GLY A  141-  
Residue   135 is ASN A  142-  
Residue   136 is HIS A  143-  
Residue   137 is THR A  144-  
Residue   138 is PRO A  145-  
Residue   139 is ILE A  146-  
Residue   140 is PHE A  147-  
Residue   141 is ARG A  148-  
Residue   142 is ASP A  149-  
Residue   143 is ALA A  150-  
Residue   144 is GLY A  151-  
Residue   145 is LEU A  152-  
Residue   146 is GLN A  154-  
Residue   147 is LEU A  155-  
Residue   148 is GLN A  156-  
Residue   149 is ALA A  157-  
Residue   150 is TYR A  158-  
Residue   151 is ARG A  159-  
Residue   152 is TYR A  160-  
Residue   153 is TYR A  161-  
Residue   154 is ASP A  162-  
Residue   155 is PRO A  163-  
Residue   156 is LYS A  164-  
Residue   157 is THR A  165-  
Residue   158 is CYS A  166-  
Residue   159 is SER A  167-  
Residue   160 is LEU A  168-  
Residue   161 is ASP A  169-  
Residue   162 is PHE A  170-  
Residue   163 is THR A  171-  
Residue   164 is GLY A  172-  
Residue   165 is ALA A  173-  
Residue   166 is MET A  174-  
Residue   167 is GLU A  175-  
Residue   168 is ASP A  176-  
Residue   169 is ILE A  177-  
Residue   170 is SER A  178-  
Residue   171 is LYS A  179-  
Residue   172 is ILE A  180-  
Residue   173 is PRO A  181-  
Residue   174 is GLU A  182-  
Residue   175 is LYS A  183-  
Residue   176 is SER A  184-  
Residue   177 is ILE A  185-  
Residue   178 is ILE A  186-  
Residue   179 is LEU A  187-  
Residue   180 is LEU A  188-  
Residue   181 is HIS A  189-  
Residue   182 is ALA A  190-  
Residue   183 is CYS A  191-  
Residue   184 is ALA A  192-  
Residue   185 is HIS A  193-  
Residue   186 is ASN A  194-  
Residue   187 is PRO A  195-  
Residue   188 is THR A  196-  
Residue   189 is GLY A  197-  
Residue   190 is VAL A  198-  
Residue   191 is ASP A  199-  
Residue   192 is PRO A  200-  
Residue   193 is ARG A  201-  
Residue   194 is GLN A  202-  
Residue   195 is GLU A  203-  
Residue   196 is GLN A  204-  
Residue   197 is TRP A  205-  
Residue   198 is LYS A  206-  
Residue   199 is GLU A  207-  
Residue   200 is LEU A  208-  
Residue   201 is ALA A  209-  
Residue   202 is SER A  210-  
Residue   203 is VAL A  211-  
Residue   204 is VAL A  212-  
Residue   205 is LYS A  213-  
Residue   206 is LYS A  214-  
Residue   207 is ARG A  215-  
Residue   208 is ASN A  216-  
Residue   209 is LEU A  217-  
Residue   210 is LEU A  218-  
Residue   211 is ALA A  219-  
Residue   212 is TYR A  220-  
Residue   213 is PHE A  221-  
Residue   214 is ASP A  222-  
Residue   215 is MET A  223-  
Residue   216 is ALA A  224-  
Residue   217 is TYR A  225-  
Residue   218 is GLN A  226-  
Residue   219 is GLY A  227-  
Residue   220 is PHE A  228-  
Residue   221 is ALA A  229-  
Residue   222 is SER A  230-  
Residue   223 is GLY A  231-  
Residue   224 is ASP A  232-  
Residue   225 is ILE A  233-  
Residue   226 is ASN A  234-  
Residue   227 is ARG A  235-  
Residue   228 is ASP A  236-  
Residue   229 is ALA A  237-  
Residue   230 is TRP A  238-  
Residue   231 is ALA A  239-  
Residue   232 is LEU A  240-  
Residue   233 is ARG A  241-  
Residue   234 is HIS A  242-  
Residue   235 is PHE A  243-  
Residue   236 is ILE A  244-  
Residue   237 is GLU A  245-  
Residue   238 is GLN A  246-  
Residue   239 is GLY A  247-  
Residue   240 is ILE A  248-  
Residue   241 is ASP A  249-  
Residue   242 is VAL A  250-  
Residue   243 is VAL A  251-  
Residue   244 is LEU A  252-  
Residue   245 is SER A  253-  
Residue   246 is GLN A  254-  
Residue   247 is SER A  255-  
Residue   248 is TYR A  256-  
Residue   249 is ALA A  257-  
Residue   250 is LYS A  258-  
Residue   251 is ASN A  259-  
Residue   252 is MET A  260-  
Residue   253 is GLY A  261-  
Residue   254 is LEU A  262-  
Residue   255 is TYR A  263-  
Residue   256 is GLY A  264-  
Residue   257 is GLU A  265-  
Residue   258 is ARG A  266-  
Residue   259 is ALA A  267-  
Residue   260 is GLY A  268-  
Residue   261 is ALA A  269-  
Residue   262 is PHE A  270-  
Residue   263 is THR A  271-  
Residue   264 is VAL A  272-  
Residue   265 is ILE A  273-  
Residue   266 is CYS A  274-  
Residue   267 is ARG A  275-  
Residue   268 is ASP A  276-  
Residue   269 is ALA A  277-  
Residue   270 is GLU A  278-  
Residue   271 is GLU A  279-  
Residue   272 is ALA A  280-  
Residue   273 is LYS A  281-  
Residue   274 is ARG A  282-  
Residue   275 is VAL A  283-  
Residue   276 is GLU A  284-  
Residue   277 is SER A  285-  
Residue   278 is GLN A  286-  
Residue   279 is LEU A  287-  
Residue   280 is LYS A  288-  
Residue   281 is ILE A  289-  
Residue   282 is LEU A  290-  
Residue   283 is ILE A  291-  
Residue   284 is ARG A  292-  
Residue   285 is PRO A  293-  
Residue   286 is MET A  294-  
Residue   287 is TYR A  295-  
Residue   288 is SER A  296-  
Residue   289 is ASN A  297-  
Residue   290 is PRO A  298-  
Residue   291 is PRO A  299-  
Residue   292 is MET A  300-  
Residue   293 is ASN A  301-  
Residue   294 is GLY A  302-  
Residue   295 is ALA A  303-  
Residue   296 is ARG A  304-  
Residue   297 is ILE A  305-  
Residue   298 is ALA A  306-  
Residue   299 is SER A  307-  
Residue   300 is LEU A  308-  
Residue   301 is ILE A  309-  
Residue   302 is LEU A  310-  
Residue   303 is ASN A  311-  
Residue   304 is THR A  312-  
Residue   305 is PRO A  313-  
Residue   306 is GLU A  314-  
Residue   307 is LEU A  315-  
Residue   308 is ARG A  316-  
Residue   309 is LYS A  317-  
Residue   310 is GLU A  318-  
Residue   311 is TRP A  319-  
Residue   312 is LEU A  320-  
Residue   313 is VAL A  321-  
Residue   314 is GLU A  322-  
Residue   315 is VAL A  323-  
Residue   316 is LYS A  324-  
Residue   317 is GLY A  325-  
Residue   318 is MET A  326-  
Residue   319 is ALA A  327-  
Residue   320 is ASP A  328-  
Residue   321 is ARG A  329-  
Residue   322 is ILE A  330-  
Residue   323 is ILE A  331-  
Residue   324 is SER A  332-  
Residue   325 is MET A  333-  
Residue   326 is ARG A  334-  
Residue   327 is THR A  335-  
Residue   328 is GLN A  336-  
Residue   329 is LEU A  337-  
Residue   330 is VAL A  338-  
Residue   331 is SER A  339-  
Residue   332 is ASN A  340-  
Residue   333 is LEU A  341-  
Residue   334 is LYS A  342-  
Residue   335 is LYS A  343-  
Residue   336 is GLU A  344-  
Residue   337 is GLY A  345-  
Residue   338 is SER A  346-  
Residue   339 is SER A  347-  
Residue   340 is HIS A  348-  
Residue   341 is ASN A  349-  
Residue   342 is TRP A  350-  
Residue   343 is GLN A  351-  
Residue   344 is HIS A  352-  
Residue   345 is ILE A  353-  
Residue   346 is THR A  354-  
Residue   347 is ASP A  355-  
Residue   348 is GLN A  356-  
Residue   349 is ILE A  357-  
Residue   350 is GLY A  358-  
Residue   351 is MET A  359-  
Residue   352 is PHE A  360-  
Residue   353 is CYS A  361-  
Residue   354 is PHE A  362-  
Residue   355 is THR A  363-  
Residue   356 is GLY A  364-  
Residue   357 is LEU A  365-  
Residue   358 is LYS A  366-  
Residue   359 is PRO A  367-  
Residue   360 is GLU A  368-  
Residue   361 is GLN A  369-  
Residue   362 is VAL A  370-  
Residue   363 is GLU A  371-  
Residue   364 is ARG A  372-  
Residue   365 is LEU A  373-  
Residue   366 is THR A  374-  
Residue   367 is LYS A  375-  
Residue   368 is GLU A  376-  
Residue   369 is PHE A  377-  
Residue   370 is SER A  378-  
Residue   371 is ILE A  379-  
Residue   372 is TYR A  380-  
Residue   373 is MET A  381-  
Residue   374 is THR A  382-  
Residue   375 is LYS A  383-  
Residue   376 is ASP A  384-  
Residue   377 is GLY A  385-  
Residue   378 is ARG A  386-  
Residue   379 is ILE A  387-  
Residue   380 is SER A  388-  
Residue   381 is VAL A  389-  
Residue   382 is ALA A  390-  
Residue   383 is GLY A  391-  
Residue   384 is VAL A  392-  
Residue   385 is ALA A  393-  
Residue   386 is SER A  394-  
Residue   387 is SER A  395-  
Residue   388 is ASN A  396-  
Residue   389 is VAL A  397-  
Residue   390 is GLY A  398-  
Residue   391 is TYR A  399-  
Residue   392 is LEU A  400-  
Residue   393 is ALA A  401-  
Residue   394 is HIS A  402-  
Residue   395 is ALA A  403-  
Residue   396 is ILE A  404-  
Residue   397 is HIS A  405-  
Residue   398 is GLN A  406-  
Residue   399 is VAL A  408-  
Residue   400 is THR A  409-  
Residue   401 is LYS A  410-  
Residue   402 is PLP A  258-  
Residue   403 is HOH A    1-  
Residue   404 is HOH A    2-  
Residue   405 is HOH A    3-  
Residue   406 is HOH A    4-  
Residue   407 is HOH A    5-  
Residue   408 is HOH A    6-  
Residue   409 is HOH A    7-  
Residue   410 is HOH A    8-  
Residue   411 is HOH A    9-  
Residue   412 is HOH A   10-  
Residue   413 is HOH A   11-  
Residue   414 is HOH A   12-  
Residue   415 is HOH A   13-  
Residue   416 is HOH A   14-  
Residue   417 is HOH A   15-  
Residue   418 is HOH A   16-  
Residue   419 is HOH A   17-  
Residue   420 is HOH A   18-  
Residue   421 is HOH A   19-  
Residue   422 is HOH A   20-  
Residue   423 is HOH A   21-  
Residue   424 is HOH A   22-  
Residue   425 is HOH A   23-  
Residue   426 is HOH A   24-  
Residue   427 is HOH A   25-  
Residue   428 is HOH A   26-  
Residue   429 is HOH A   27-  
Residue   430 is HOH A   28-  
Residue   431 is HOH A   29-  
Residue   432 is HOH A   30-  
Residue   433 is HOH A   31-  
Residue   434 is HOH A   32-  
Residue   435 is HOH A   33-  
Residue   436 is HOH A   34-  
Residue   437 is HOH A   35-  
Residue   438 is HOH A   36-  
Residue   439 is HOH A   37-  
Residue   440 is HOH A   38-  
Residue   441 is HOH A   39-  
Residue   442 is HOH A   40-  
Residue   443 is HOH A   41-  
Residue   444 is HOH A   42-  
Residue   445 is HOH A   43-  
Residue   446 is HOH A   44-  
Residue   447 is HOH A   45-  
Residue   448 is HOH A   46-  
Residue   449 is HOH A   47-  
Residue   450 is HOH A   48-  
Residue   451 is HOH A   49-  
Residue   452 is HOH A   50-  
Residue   453 is HOH A   51-  
Residue   454 is HOH A   52-  
Residue   455 is HOH A   53-  
Residue   456 is HOH A   54-  
Residue   457 is HOH A   55-  
Residue   458 is HOH A   56-  
Residue   459 is HOH A   57-  
Residue   460 is HOH A   58-  
Residue   461 is HOH A   59-  
Residue   462 is HOH A   60-  
Residue   463 is HOH A   61-  
Residue   464 is HOH A   62-  
Residue   465 is HOH A   63-  
Residue   466 is HOH A   64-  
Residue   467 is HOH A   65-  
Residue   468 is HOH A   66-  
Residue   469 is HOH A   67-  
Residue   470 is HOH A   68-  
Residue   471 is HOH A   69-  
Residue   472 is HOH A   70-  
Residue   473 is HOH A   71-  
Residue   474 is HOH A   72-  
Residue   475 is HOH A   73-  
Residue   476 is HOH A   74-  
Residue   477 is HOH A   75-  
Residue   478 is HOH A   76-  
Residue   479 is HOH A   77-  
Residue   480 is HOH A   78-  
Residue   481 is HOH A   79-  
Residue   482 is HOH A   80-  
Residue   483 is HOH A   81-  
Residue   484 is HOH A   82-  
Residue   485 is HOH A   83-  
Residue   486 is HOH A   84-  
Residue   487 is HOH A   85-  
Residue   488 is HOH A   86-  
Residue   489 is HOH A   87-  
Residue   490 is HOH A   88-  
Residue   491 is HOH A   89-  
Residue   492 is HOH A   90-  
Residue   493 is HOH A   91-  
Residue   494 is HOH A   92-  
Residue   495 is HOH A   93-  
Residue   496 is HOH A   94-  
Residue   497 is HOH A   95-  
Residue   498 is HOH A   96-  
Residue   499 is HOH A   97-  
Residue   500 is HOH A   98-  
Residue   501 is HOH A   99-  
Residue   502 is HOH A  100-  
Residue   503 is HOH A  101-  
Residue   504 is HOH A  102-  
Residue   505 is HOH A  103-  
Residue   506 is HOH A  104-  
Residue   507 is HOH A  105-  
Residue   508 is HOH A  106-  
Residue   509 is HOH A  107-  
Residue   510 is HOH A  108-  
Residue   511 is HOH A  109-  
Residue   512 is HOH A  110-  
Residue   513 is HOH A  111-  
Residue   514 is HOH A  112-  
Residue   515 is HOH A  113-  
Residue   516 is HOH A  114-  
Residue   517 is HOH A  115-  
Residue   518 is HOH A  116-  
Residue   519 is HOH A  117-  
Residue   520 is HOH A  118-  
Residue   521 is HOH A  119-  
Residue   522 is HOH A  120-  
Residue   523 is HOH A  121-  
Residue   524 is HOH A  122-  
Residue   525 is HOH A  123-  
Residue   526 is HOH A  124-  
Residue   527 is HOH A  125-  
Residue   528 is HOH A  126-  
Residue   529 is HOH A  127-  
Residue   530 is HOH A  128-  
Residue   531 is HOH A  129-  
Residue   532 is HOH A  130-  
Residue   533 is HOH A  131-  
Residue   534 is HOH A  132-  
Residue   535 is HOH A  133-  
Residue   536 is HOH A  134-  
Residue   537 is HOH A  135-  
Residue   538 is HOH A  136-  
Residue   539 is HOH A  137-  
Residue   540 is HOH A  138-  
Residue   541 is HOH A  139-  
Residue   542 is HOH A  140-  
Residue   543 is HOH A  141-  
Residue   544 is HOH A  142-  
Residue   545 is HOH A  143-  
Residue   546 is HOH A  144-  
Residue   547 is HOH A  145-  
Residue   548 is HOH A  146-  
Residue   549 is HOH A  147-  
Residue   550 is HOH A  148-  
Residue   551 is HOH A  149-  
Residue   552 is HOH A  150-  
Residue   553 is HOH A  151-  
Residue   554 is HOH A  152-  
Residue   555 is HOH A  153-  
Residue   556 is HOH A  154-  
Residue   557 is HOH A  155-  
Residue   558 is HOH A  156-  
Residue   559 is HOH A  157-  
Residue   560 is HOH A  158-  
Residue   561 is HOH A  159-  
Residue   562 is HOH A  160-  
Residue   563 is HOH A  161-  
Residue   564 is HOH A  162-  
Residue   565 is HOH A  163-  
Residue   566 is HOH A  164-  
Residue   567 is HOH A  165-  
Residue   568 is HOH A  166-  
Residue   569 is HOH A  167-  
Residue   570 is HOH A  168-  
Residue   571 is HOH A  169-  
Residue   572 is HOH A  170-  
Residue   573 is HOH A  171-  
Residue   574 is HOH A  172-  
Residue   575 is HOH A  173-  
Residue   576 is HOH A  174-  
Residue   577 is HOH A  175-  
Residue   578 is HOH A  176-  
Residue   579 is HOH A  177-  
Residue   580 is HOH A  178-  
Residue   581 is HOH A  179-  
Residue   582 is HOH A  180-  
Residue   583 is HOH A  181-  
Residue   584 is HOH A  182-  
Residue   585 is HOH A  183-  
Residue   586 is HOH A  184-  
Residue   587 is HOH A  185-  
Residue   588 is HOH A  186-  
Residue   589 is HOH A  187-  
Residue   590 is HOH A  188-  
Residue   591 is HOH A  189-  
Residue   592 is HOH A  190-  
Residue   593 is HOH A  191-  
Residue   594 is HOH A  192-  
Residue   595 is HOH A  193-  
Residue   596 is HOH A  195-  
Residue   597 is HOH A  197-  
Residue   598 is HOH A  198-  
Residue   599 is HOH A  200-  
Residue   600 is HOH A  201-  
Residue   601 is HOH A  202-  
Residue   602 is HOH A  204-  
Residue   603 is HOH A  207-  
Residue   604 is HOH A  208-  
Residue   605 is HOH A  209-  
Residue   606 is HOH A  210-  
Residue   607 is HOH A  214-  
Residue   608 is HOH A  215-  
Residue   609 is HOH A  221-  
Residue   610 is HOH A  222-  
Residue   611 is HOH A  223-  
Residue   612 is HOH A  226-  
Residue   613 is HOH A  230-  
Residue   614 is HOH A  232-  
Residue   615 is HOH A  235-  
Residue   616 is HOH A  238-  
Residue   617 is HOH A  239-  
Residue   618 is HOH A  240-  
Residue   619 is HOH A  244-  
Residue   620 is HOH A  245-  
Residue   621 is HOH A  246-  
Residue   622 is HOH A  247-  
Residue   623 is HOH A  250-  
Residue   624 is HOH A  251-  
Residue   625 is HOH A  252-  
Residue   626 is HOH A  255-  
Residue   627 is HOH A  259-  
Residue   628 is HOH A  260-  
Residue   629 is HOH A  263-  
Residue   630 is HOH A  276-  
Residue   631 is HOH A  281-  
Residue   632 is HOH A  283-  
Residue   633 is HOH A  285-  
Residue   634 is HOH A  287-  
Residue   635 is HOH A  292-  
Residue   636 is HOH A  296-  
Residue   637 is HOH A  297-  
Residue   638 is HOH A  300-  
Residue   639 is HOH A  301-  
Residue   640 is HOH A  303-  
Residue   641 is HOH A  304-  
Residue   642 is HOH A  306-  
Residue   643 is HOH A  308-  
Residue   644 is HOH A  310-  
Residue   645 is HOH A  311-  
Residue   646 is HOH A  313-  
Residue   647 is HOH A  315-  
Residue   648 is HOH A  316-  
Residue   649 is HOH A  322-  
Residue   650 is HOH A  328-  
Residue   651 is HOH A  329-  
Residue   652 is HOH A  330-  
Residue   653 is HOH A  331-  
Residue   654 is HOH A  333-  
Residue   655 is HOH A  334-  
Residue   656 is HOH A  336-  
Residue   657 is HOH A  338-  
Residue   658 is HOH A  340-  
Residue   659 is HOH A  342-  
Residue   660 is HOH A  343-  
Residue   661 is HOH A  344-  
Residue   662 is HOH A  346-  
Residue   663 is HOH A  347-  
Residue   664 is HOH A  348-  
Residue   665 is HOH A  350-  
Residue   666 is HOH A  351-  
Residue   667 is HOH A  360-  
Residue   668 is HOH A  361-  
Residue   669 is HOH A  362-  
Residue   670 is HOH A  364-  
Residue   671 is HOH A  365-  
Residue   672 is HOH A  366-  
Residue   673 is HOH A  367-  
Residue   674 is HOH A  369-  
Residue   675 is HOH A  374-  
Residue   676 is HOH A  375-  
Residue   677 is HOH A  376-  
Residue   678 is HOH A  378-  
Residue   679 is HOH A  380-  
Residue   680 is HOH A  381-  
Residue   681 is HOH A  383-  
Residue   682 is HOH A  384-  
Residue   683 is HOH A  386-  
Residue   684 is HOH A  387-  
Residue   685 is HOH A  388-  
Residue   686 is HOH A  395-  
Residue   687 is HOH A  396-  
Residue   688 is HOH A  397-  
Residue   689 is HOH A  398-  
Residue   690 is HOH A  399-  
Residue   691 is HOH A  400-  
Residue   692 is HOH A  401-  
Residue   693 is HOH A  403-  
Residue   694 is HOH A  409-  
Residue   695 is SER B    3-  
Residue   696 is SER B    4-  
Residue   697 is TRP B    5-  
Residue   698 is TRP B    6-  
Residue   699 is SER B    7-  
Residue   700 is HIS B    8-  
Residue   701 is VAL B    9-  
Residue   702 is GLU B   10-  
Residue   703 is MET B   11-  
Residue   704 is GLY B   12-  
Residue   705 is PRO B   13-  
Residue   706 is PRO B   14-  
Residue   707 is ASP B   15-  
Residue   708 is PRO B   16-  
Residue   709 is ILE B   17-  
Residue   710 is LEU B   18-  
Residue   711 is GLY B   19-  
Residue   712 is VAL B   20-  
Residue   713 is THR B   21-  
Residue   714 is GLU B   22-  
Residue   715 is ALA B   23-  
Residue   716 is PHE B   24-  
Residue   717 is LYS B   25-  
Residue   718 is ARG B   26-  
Residue   719 is ASP B   27-  
Residue   720 is THR B   28-  
Residue   721 is ASN B   29-  
Residue   722 is SER B   30-  
Residue   723 is LYS B   31-  
Residue   724 is LYS B   32-  
Residue   725 is MET B   33-  
Residue   726 is ASN B   34-  
Residue   727 is LEU B   35-  
Residue   728 is GLY B   36-  
Residue   729 is VAL B   37-  
Residue   730 is GLY B   38-  
Residue   731 is ALA B   39-  
Residue   732 is TYR B   40-  
Residue   733 is ARG B   41-  
Residue   734 is ASP B   42-  
Residue   735 is ASP B   43-  
Residue   736 is ASN B   44-  
Residue   737 is GLY B   45-  
Residue   738 is LYS B   46-  
Residue   739 is PRO B   47-  
Residue   740 is TYR B   48-  
Residue   741 is VAL B   49-  
Residue   742 is LEU B   50-  
Residue   743 is ASN B   51-  
Residue   744 is CYS B   52-  
Residue   745 is VAL B   53-  
Residue   746 is ARG B   54-  
Residue   747 is LYS B   55-  
Residue   748 is ALA B   56-  
Residue   749 is GLU B   57-  
Residue   750 is ALA B   58-  
Residue   751 is MET B   59-  
Residue   752 is ILE B   60-  
Residue   753 is ALA B   61-  
Residue   754 is ALA B   62-  
Residue   755 is LYS B   63-  
Residue   756 is LYS B   64-  
Residue   757 is MET B   66-  
Residue   758 is ASP B   67-  
Residue   759 is LYS B   68-  
Residue   760 is GLU B   69-  
Residue   761 is TYR B   70-  
Residue   762 is LEU B   71-  
Residue   763 is PRO B   72-  
Residue   764 is ILE B   73-  
Residue   765 is ALA B   74-  
Residue   766 is GLY B   75-  
Residue   767 is LEU B   76-  
Residue   768 is ALA B   77-  
Residue   769 is ASP B   78-  
Residue   770 is PHE B   79-  
Residue   771 is THR B   80-  
Residue   772 is ARG B   81-  
Residue   773 is ALA B   82-  
Residue   774 is SER B   83-  
Residue   775 is ALA B   84-  
Residue   776 is GLU B   85-  
Residue   777 is LEU B   86-  
Residue   778 is ALA B   87-  
Residue   779 is LEU B   88-  
Residue   780 is GLY B   89-  
Residue   781 is GLU B   90-  
Residue   782 is ASN B   91-  
Residue   783 is SER B   92-  
Residue   784 is GLU B   93-  
Residue   785 is ALA B   94-  
Residue   786 is PHE B   95-  
Residue   787 is LYS B   96-  
Residue   788 is SER B   97-  
Residue   789 is GLY B   98-  
Residue   790 is ARG B   99-  
Residue   791 is TYR B  100-  
Residue   792 is VAL B  101-  
Residue   793 is THR B  102-  
Residue   794 is VAL B  103-  
Residue   795 is GLN B  104-  
Residue   796 is GLY B  105-  
Residue   797 is ILE B  106-  
Residue   798 is SER B  107-  
Residue   799 is GLY B  108-  
Residue   800 is THR B  109-  
Residue   801 is GLY B  110-  
Residue   802 is SER B  111-  
Residue   803 is LEU B  112-  
Residue   804 is ARG B  113-  
Residue   805 is VAL B  114-  
Residue   806 is GLY B  115-  
Residue   807 is ALA B  116-  
Residue   808 is ASN B  117-  
Residue   809 is PHE B  118-  
Residue   810 is LEU B  119-  
Residue   811 is GLN B  120-  
Residue   812 is ARG B  121-  
Residue   813 is PHE B  122-  
Residue   814 is PHE B  123-  
Residue   815 is LYS B  124-  
Residue   816 is PHE B  125-  
Residue   817 is SER B  126-  
Residue   818 is ARG B  129-  
Residue   819 is ASP B  130-  
Residue   820 is VAL B  133-  
Residue   821 is TYR B  134-  
Residue   822 is LEU B  135-  
Residue   823 is PRO B  136-  
Residue   824 is LYS B  137-  
Residue   825 is PRO B  138-  
Residue   826 is SER B  139-  
Residue   827 is TRP B  140-  
Residue   828 is GLY B  141-  
Residue   829 is ASN B  142-  
Residue   830 is HIS B  143-  
Residue   831 is THR B  144-  
Residue   832 is PRO B  145-  
Residue   833 is ILE B  146-  
Residue   834 is PHE B  147-  
Residue   835 is ARG B  148-  
Residue   836 is ASP B  149-  
Residue   837 is ALA B  150-  
Residue   838 is GLY B  151-  
Residue   839 is LEU B  152-  
Residue   840 is GLN B  154-  
Residue   841 is LEU B  155-  
Residue   842 is GLN B  156-  
Residue   843 is ALA B  157-  
Residue   844 is TYR B  158-  
Residue   845 is ARG B  159-  
Residue   846 is TYR B  160-  
Residue   847 is TYR B  161-  
Residue   848 is ASP B  162-  
Residue   849 is PRO B  163-  
Residue   850 is LYS B  164-  
Residue   851 is THR B  165-  
Residue   852 is CYS B  166-  
Residue   853 is SER B  167-  
Residue   854 is LEU B  168-  
Residue   855 is ASP B  169-  
Residue   856 is PHE B  170-  
Residue   857 is THR B  171-  
Residue   858 is GLY B  172-  
Residue   859 is ALA B  173-  
Residue   860 is MET B  174-  
Residue   861 is GLU B  175-  
Residue   862 is ASP B  176-  
Residue   863 is ILE B  177-  
Residue   864 is SER B  178-  
Residue   865 is LYS B  179-  
Residue   866 is ILE B  180-  
Residue   867 is PRO B  181-  
Residue   868 is GLU B  182-  
Residue   869 is LYS B  183-  
Residue   870 is SER B  184-  
Residue   871 is ILE B  185-  
Residue   872 is ILE B  186-  
Residue   873 is LEU B  187-  
Residue   874 is LEU B  188-  
Residue   875 is HIS B  189-  
Residue   876 is ALA B  190-  
Residue   877 is CYS B  191-  
Residue   878 is ALA B  192-  
Residue   879 is HIS B  193-  
Residue   880 is ASN B  194-  
Residue   881 is PRO B  195-  
Residue   882 is THR B  196-  
Residue   883 is GLY B  197-  
Residue   884 is VAL B  198-  
Residue   885 is ASP B  199-  
Residue   886 is PRO B  200-  
Residue   887 is ARG B  201-  
Residue   888 is GLN B  202-  
Residue   889 is GLU B  203-  
Residue   890 is GLN B  204-  
Residue   891 is TRP B  205-  
Residue   892 is LYS B  206-  
Residue   893 is GLU B  207-  
Residue   894 is LEU B  208-  
Residue   895 is ALA B  209-  
Residue   896 is SER B  210-  
Residue   897 is VAL B  211-  
Residue   898 is VAL B  212-  
Residue   899 is LYS B  213-  
Residue   900 is LYS B  214-  
Residue   901 is ARG B  215-  
Residue   902 is ASN B  216-  
Residue   903 is LEU B  217-  
Residue   904 is LEU B  218-  
Residue   905 is ALA B  219-  
Residue   906 is TYR B  220-  
Residue   907 is PHE B  221-  
Residue   908 is ASP B  222-  
Residue   909 is MET B  223-  
Residue   910 is ALA B  224-  
Residue   911 is TYR B  225-  
Residue   912 is GLN B  226-  
Residue   913 is GLY B  227-  
Residue   914 is PHE B  228-  
Residue   915 is ALA B  229-  
Residue   916 is SER B  230-  
Residue   917 is GLY B  231-  
Residue   918 is ASP B  232-  
Residue   919 is ILE B  233-  
Residue   920 is ASN B  234-  
Residue   921 is ARG B  235-  
Residue   922 is ASP B  236-  
Residue   923 is ALA B  237-  
Residue   924 is TRP B  238-  
Residue   925 is ALA B  239-  
Residue   926 is LEU B  240-  
Residue   927 is ARG B  241-  
Residue   928 is HIS B  242-  
Residue   929 is PHE B  243-  
Residue   930 is ILE B  244-  
Residue   931 is GLU B  245-  
Residue   932 is GLN B  246-  
Residue   933 is GLY B  247-  
Residue   934 is ILE B  248-  
Residue   935 is ASP B  249-  
Residue   936 is VAL B  250-  
Residue   937 is VAL B  251-  
Residue   938 is LEU B  252-  
Residue   939 is SER B  253-  
Residue   940 is GLN B  254-  
Residue   941 is SER B  255-  
Residue   942 is TYR B  256-  
Residue   943 is ALA B  257-  
Residue   944 is LYS B  258-  
Residue   945 is ASN B  259-  
Residue   946 is MET B  260-  
Residue   947 is GLY B  261-  
Residue   948 is LEU B  262-  
Residue   949 is TYR B  263-  
Residue   950 is GLY B  264-  
Residue   951 is GLU B  265-  
Residue   952 is ARG B  266-  
Residue   953 is ALA B  267-  
Residue   954 is GLY B  268-  
Residue   955 is ALA B  269-  
Residue   956 is PHE B  270-  
Residue   957 is THR B  271-  
Residue   958 is VAL B  272-  
Residue   959 is ILE B  273-  
Residue   960 is CYS B  274-  
Residue   961 is ARG B  275-  
Residue   962 is ASP B  276-  
Residue   963 is ALA B  277-  
Residue   964 is GLU B  278-  
Residue   965 is GLU B  279-  
Residue   966 is ALA B  280-  
Residue   967 is LYS B  281-  
Residue   968 is ARG B  282-  
Residue   969 is VAL B  283-  
Residue   970 is GLU B  284-  
Residue   971 is SER B  285-  
Residue   972 is GLN B  286-  
Residue   973 is LEU B  287-  
Residue   974 is LYS B  288-  
Residue   975 is ILE B  289-  
Residue   976 is LEU B  290-  
Residue   977 is ILE B  291-  
Residue   978 is ARG B  292-  
Residue   979 is PRO B  293-  
Residue   980 is MET B  294-  
Residue   981 is TYR B  295-  
Residue   982 is SER B  296-  
Residue   983 is ASN B  297-  
Residue   984 is PRO B  298-  
Residue   985 is PRO B  299-  
Residue   986 is MET B  300-  
Residue   987 is ASN B  301-  
Residue   988 is GLY B  302-  
Residue   989 is ALA B  303-  
Residue   990 is ARG B  304-  
Residue   991 is ILE B  305-  
Residue   992 is ALA B  306-  
Residue   993 is SER B  307-  
Residue   994 is LEU B  308-  
Residue   995 is ILE B  309-  
Residue   996 is LEU B  310-  
Residue   997 is ASN B  311-  
Residue   998 is THR B  312-  
Residue   999 is PRO B  313-  
Residue  1000 is GLU B  314-  
Residue  1001 is LEU B  315-  
Residue  1002 is ARG B  316-  
Residue  1003 is LYS B  317-  
Residue  1004 is GLU B  318-  
Residue  1005 is TRP B  319-  
Residue  1006 is LEU B  320-  
Residue  1007 is VAL B  321-  
Residue  1008 is GLU B  322-  
Residue  1009 is VAL B  323-  
Residue  1010 is LYS B  324-  
Residue  1011 is GLY B  325-  
Residue  1012 is MET B  326-  
Residue  1013 is ALA B  327-  
Residue  1014 is ASP B  328-  
Residue  1015 is ARG B  329-  
Residue  1016 is ILE B  330-  
Residue  1017 is ILE B  331-  
Residue  1018 is SER B  332-  
Residue  1019 is MET B  333-  
Residue  1020 is ARG B  334-  
Residue  1021 is THR B  335-  
Residue  1022 is GLN B  336-  
Residue  1023 is LEU B  337-  
Residue  1024 is VAL B  338-  
Residue  1025 is SER B  339-  
Residue  1026 is ASN B  340-  
Residue  1027 is LEU B  341-  
Residue  1028 is LYS B  342-  
Residue  1029 is LYS B  343-  
Residue  1030 is GLU B  344-  
Residue  1031 is GLY B  345-  
Residue  1032 is SER B  346-  
Residue  1033 is SER B  347-  
Residue  1034 is HIS B  348-  
Residue  1035 is ASN B  349-  
Residue  1036 is TRP B  350-  
Residue  1037 is GLN B  351-  
Residue  1038 is HIS B  352-  
Residue  1039 is ILE B  353-  
Residue  1040 is THR B  354-  
Residue  1041 is ASP B  355-  
Residue  1042 is GLN B  356-  
Residue  1043 is ILE B  357-  
Residue  1044 is GLY B  358-  
Residue  1045 is MET B  359-  
Residue  1046 is PHE B  360-  
Residue  1047 is CYS B  361-  
Residue  1048 is PHE B  362-  
Residue  1049 is THR B  363-  
Residue  1050 is GLY B  364-  
Residue  1051 is LEU B  365-  
Residue  1052 is LYS B  366-  
Residue  1053 is PRO B  367-  
Residue  1054 is GLU B  368-  
Residue  1055 is GLN B  369-  
Residue  1056 is VAL B  370-  
Residue  1057 is GLU B  371-  
Residue  1058 is ARG B  372-  
Residue  1059 is LEU B  373-  
Residue  1060 is THR B  374-  
Residue  1061 is LYS B  375-  
Residue  1062 is GLU B  376-  
Residue  1063 is PHE B  377-  
Residue  1064 is SER B  378-  
Residue  1065 is ILE B  379-  
Residue  1066 is TYR B  380-  
Residue  1067 is MET B  381-  
Residue  1068 is THR B  382-  
Residue  1069 is LYS B  383-  
Residue  1070 is ASP B  384-  
Residue  1071 is GLY B  385-  
Residue  1072 is ARG B  386-  
Residue  1073 is ILE B  387-  
Residue  1074 is SER B  388-  
Residue  1075 is VAL B  389-  
Residue  1076 is ALA B  390-  
Residue  1077 is GLY B  391-  
Residue  1078 is VAL B  392-  
Residue  1079 is ALA B  393-  
Residue  1080 is SER B  394-  
Residue  1081 is SER B  395-  
Residue  1082 is ASN B  396-  
Residue  1083 is VAL B  397-  
Residue  1084 is GLY B  398-  
Residue  1085 is TYR B  399-  
Residue  1086 is LEU B  400-  
Residue  1087 is ALA B  401-  
Residue  1088 is HIS B  402-  
Residue  1089 is ALA B  403-  
Residue  1090 is ILE B  404-  
Residue  1091 is HIS B  405-  
Residue  1092 is GLN B  406-  
Residue  1093 is VAL B  408-  
Residue  1094 is THR B  409-  
Residue  1095 is LYS B  410-  
Residue  1096 is PLP B  258-  
Residue  1097 is HOH B    1-  
Residue  1098 is HOH B    2-  
Residue  1099 is HOH B    3-  
Residue  1100 is HOH B    4-  
Residue  1101 is HOH B    5-  
Residue  1102 is HOH B    6-  
Residue  1103 is HOH B    7-  
Residue  1104 is HOH B    8-  
Residue  1105 is HOH B    9-  
Residue  1106 is HOH B   10-  
Residue  1107 is HOH B   11-  
Residue  1108 is HOH B   12-  
Residue  1109 is HOH B   13-  
Residue  1110 is HOH B   14-  
Residue  1111 is HOH B   15-  
Residue  1112 is HOH B   16-  
Residue  1113 is HOH B   17-  
Residue  1114 is HOH B   18-  
Residue  1115 is HOH B   19-  
Residue  1116 is HOH B   20-  
Residue  1117 is HOH B   21-  
Residue  1118 is HOH B   22-  
Residue  1119 is HOH B   23-  
Residue  1120 is HOH B   24-  
Residue  1121 is HOH B   25-  
Residue  1122 is HOH B   26-  
Residue  1123 is HOH B   27-  
Residue  1124 is HOH B   28-  
Residue  1125 is HOH B   29-  
Residue  1126 is HOH B   30-  
Residue  1127 is HOH B   31-  
Residue  1128 is HOH B   32-  
Residue  1129 is HOH B   33-  
Residue  1130 is HOH B   34-  
Residue  1131 is HOH B   35-  
Residue  1132 is HOH B   36-  
Residue  1133 is HOH B   37-  
Residue  1134 is HOH B   38-  
Residue  1135 is HOH B   39-  
Residue  1136 is HOH B   40-  
Residue  1137 is HOH B   41-  
Residue  1138 is HOH B   42-  
Residue  1139 is HOH B   43-  
Residue  1140 is HOH B   44-  
Residue  1141 is HOH B   45-  
Residue  1142 is HOH B   46-  
Residue  1143 is HOH B   47-  
Residue  1144 is HOH B   48-  
Residue  1145 is HOH B   49-  
Residue  1146 is HOH B   50-  
Residue  1147 is HOH B   51-  
Residue  1148 is HOH B   52-  
Residue  1149 is HOH B   53-  
Residue  1150 is HOH B   54-  
Residue  1151 is HOH B   55-  
Residue  1152 is HOH B   56-  
Residue  1153 is HOH B   57-  
Residue  1154 is HOH B   58-  
Residue  1155 is HOH B   59-  
Residue  1156 is HOH B   60-  
Residue  1157 is HOH B   61-  
Residue  1158 is HOH B   62-  
Residue  1159 is HOH B   63-  
Residue  1160 is HOH B   64-  
Residue  1161 is HOH B   65-  
Residue  1162 is HOH B   66-  
Residue  1163 is HOH B   67-  
Residue  1164 is HOH B   68-  
Residue  1165 is HOH B   69-  
Residue  1166 is HOH B   70-  
Residue  1167 is HOH B   71-  
Residue  1168 is HOH B   72-  
Residue  1169 is HOH B   73-  
Residue  1170 is HOH B   74-  
Residue  1171 is HOH B   75-  
Residue  1172 is HOH B   76-  
Residue  1173 is HOH B   77-  
Residue  1174 is HOH B   78-  
Residue  1175 is HOH B   79-  
Residue  1176 is HOH B   80-  
Residue  1177 is HOH B   81-  
Residue  1178 is HOH B   82-  
Residue  1179 is HOH B   83-  
Residue  1180 is HOH B   84-  
Residue  1181 is HOH B   85-  
Residue  1182 is HOH B   86-  
Residue  1183 is HOH B   87-  
Residue  1184 is HOH B   88-  
Residue  1185 is HOH B   89-  
Residue  1186 is HOH B   90-  
Residue  1187 is HOH B   91-  
Residue  1188 is HOH B   92-  
Residue  1189 is HOH B   93-  
Residue  1190 is HOH B   94-  
Residue  1191 is HOH B   95-  
Residue  1192 is HOH B   96-  
Residue  1193 is HOH B   97-  
Residue  1194 is HOH B   98-  
Residue  1195 is HOH B   99-  
Residue  1196 is HOH B  100-  
Residue  1197 is HOH B  101-  
Residue  1198 is HOH B  102-  
Residue  1199 is HOH B  103-  
Residue  1200 is HOH B  104-  
Residue  1201 is HOH B  105-  
Residue  1202 is HOH B  106-  
Residue  1203 is HOH B  107-  
Residue  1204 is HOH B  108-  
Residue  1205 is HOH B  109-  
Residue  1206 is HOH B  110-  
Residue  1207 is HOH B  111-  
Residue  1208 is HOH B  112-  
Residue  1209 is HOH B  113-  
Residue  1210 is HOH B  114-  
Residue  1211 is HOH B  115-  
Residue  1212 is HOH B  116-  
Residue  1213 is HOH B  117-  
Residue  1214 is HOH B  118-  
Residue  1215 is HOH B  119-  
Residue  1216 is HOH B  120-  
Residue  1217 is HOH B  121-  
Residue  1218 is HOH B  122-  
Residue  1219 is HOH B  123-  
Residue  1220 is HOH B  124-  
Residue  1221 is HOH B  125-  
Residue  1222 is HOH B  126-  
Residue  1223 is HOH B  127-  
Residue  1224 is HOH B  128-  
Residue  1225 is HOH B  129-  
Residue  1226 is HOH B  130-  
Residue  1227 is HOH B  131-  
Residue  1228 is HOH B  132-  
Residue  1229 is HOH B  133-  
Residue  1230 is HOH B  134-  
Residue  1231 is HOH B  135-  
Residue  1232 is HOH B  136-  
Residue  1233 is HOH B  137-  
Residue  1234 is HOH B  138-  
Residue  1235 is HOH B  139-  
Residue  1236 is HOH B  140-  
Residue  1237 is HOH B  141-  
Residue  1238 is HOH B  142-  
Residue  1239 is HOH B  143-  
Residue  1240 is HOH B  144-  
Residue  1241 is HOH B  145-  
Residue  1242 is HOH B  146-  
Residue  1243 is HOH B  147-  
Residue  1244 is HOH B  148-  
Residue  1245 is HOH B  149-  
Residue  1246 is HOH B  150-  
Residue  1247 is HOH B  151-  
Residue  1248 is HOH B  152-  
Residue  1249 is HOH B  153-  
Residue  1250 is HOH B  154-  
Residue  1251 is HOH B  155-  
Residue  1252 is HOH B  156-  
Residue  1253 is HOH B  157-  
Residue  1254 is HOH B  158-  
Residue  1255 is HOH B  159-  
Residue  1256 is HOH B  160-  
Residue  1257 is HOH B  161-  
Residue  1258 is HOH B  162-  
Residue  1259 is HOH B  163-  
Residue  1260 is HOH B  164-  
Residue  1261 is HOH B  165-  
Residue  1262 is HOH B  166-  
Residue  1263 is HOH B  167-  
Residue  1264 is HOH B  168-  
Residue  1265 is HOH B  169-  
Residue  1266 is HOH B  170-  
Residue  1267 is HOH B  171-  
Residue  1268 is HOH B  172-  
Residue  1269 is HOH B  173-  
Residue  1270 is HOH B  174-  
Residue  1271 is HOH B  175-  
Residue  1272 is HOH B  176-  
Residue  1273 is HOH B  177-  
Residue  1274 is HOH B  178-  
Residue  1275 is HOH B  179-  
Residue  1276 is HOH B  180-  
Residue  1277 is HOH B  181-  
Residue  1278 is HOH B  182-  
Residue  1279 is HOH B  183-  
Residue  1280 is HOH B  184-  
Residue  1281 is HOH B  185-  
Residue  1282 is HOH B  186-  
Residue  1283 is HOH B  187-  
Residue  1284 is HOH B  188-  
Residue  1285 is HOH B  189-  
Residue  1286 is HOH B  190-  
Residue  1287 is HOH B  191-  
Residue  1288 is HOH B  194-  
Residue  1289 is HOH B  196-  
Residue  1290 is HOH B  199-  
Residue  1291 is HOH B  203-  
Residue  1292 is HOH B  205-  
Residue  1293 is HOH B  206-  
Residue  1294 is HOH B  211-  
Residue  1295 is HOH B  212-  
Residue  1296 is HOH B  213-  
Residue  1297 is HOH B  216-  
Residue  1298 is HOH B  217-  
Residue  1299 is HOH B  218-  
Residue  1300 is HOH B  219-  
Residue  1301 is HOH B  220-  
Residue  1302 is HOH B  224-  
Residue  1303 is HOH B  225-  
Residue  1304 is HOH B  227-  
Residue  1305 is HOH B  228-  
Residue  1306 is HOH B  229-  
Residue  1307 is HOH B  231-  
Residue  1308 is HOH B  233-  
Residue  1309 is HOH B  234-  
Residue  1310 is HOH B  236-  
Residue  1311 is HOH B  237-  
Residue  1312 is HOH B  241-  
Residue  1313 is HOH B  242-  
Residue  1314 is HOH B  243-  
Residue  1315 is HOH B  248-  
Residue  1316 is HOH B  249-  
Residue  1317 is HOH B  253-  
Residue  1318 is HOH B  254-  
Residue  1319 is HOH B  256-  
Residue  1320 is HOH B  257-  
Residue  1321 is HOH B  258-  
Residue  1322 is HOH B  261-  
Residue  1323 is HOH B  262-  
Residue  1324 is HOH B  264-  
Residue  1325 is HOH B  265-  
Residue  1326 is HOH B  266-  
Residue  1327 is HOH B  267-  
Residue  1328 is HOH B  268-  
Residue  1329 is HOH B  269-  
Residue  1330 is HOH B  270-  
Residue  1331 is HOH B  271-  
Residue  1332 is HOH B  272-  
Residue  1333 is HOH B  273-  
Residue  1334 is HOH B  274-  
Residue  1335 is HOH B  275-  
Residue  1336 is HOH B  277-  
Residue  1337 is HOH B  278-  
Residue  1338 is HOH B  279-  
Residue  1339 is HOH B  280-  
Residue  1340 is HOH B  282-  
Residue  1341 is HOH B  284-  
Residue  1342 is HOH B  286-  
Residue  1343 is HOH B  288-  
Residue  1344 is HOH B  289-  
Residue  1345 is HOH B  290-  
Residue  1346 is HOH B  291-  
Residue  1347 is HOH B  293-  
Residue  1348 is HOH B  294-  
Residue  1349 is HOH B  295-  
Residue  1350 is HOH B  298-  
Residue  1351 is HOH B  299-  
Residue  1352 is HOH B  302-  
Residue  1353 is HOH B  305-  
Residue  1354 is HOH B  307-  
Residue  1355 is HOH B  309-  
Residue  1356 is HOH B  312-  
Residue  1357 is HOH B  314-  
Residue  1358 is HOH B  317-  
Residue  1359 is HOH B  318-  
Residue  1360 is HOH B  319-  
Residue  1361 is HOH B  320-  
Residue  1362 is HOH B  321-  
Residue  1363 is HOH B  323-  
Residue  1364 is HOH B  324-  
Residue  1365 is HOH B  325-  
Residue  1366 is HOH B  326-  
Residue  1367 is HOH B  327-  
Residue  1368 is HOH B  332-  
Residue  1369 is HOH B  335-  
Residue  1370 is HOH B  337-  
Residue  1371 is HOH B  339-  
Residue  1372 is HOH B  341-  
Residue  1373 is HOH B  345-  
Residue  1374 is HOH B  349-  
Residue  1375 is HOH B  352-  
Residue  1376 is HOH B  353-  
Residue  1377 is HOH B  354-  
Residue  1378 is HOH B  355-  
Residue  1379 is HOH B  356-  
Residue  1380 is HOH B  357-  
Residue  1381 is HOH B  358-  
Residue  1382 is HOH B  359-  
Residue  1383 is HOH B  363-  
Residue  1384 is HOH B  368-  
Residue  1385 is HOH B  370-  
Residue  1386 is HOH B  371-  
Residue  1387 is HOH B  372-  
Residue  1388 is HOH B  373-  
Residue  1389 is HOH B  377-  
Residue  1390 is HOH B  379-  
Residue  1391 is HOH B  382-  
Residue  1392 is HOH B  385-  
Residue  1393 is HOH B  389-  
Residue  1394 is HOH B  390-  
Residue  1395 is HOH B  391-  
Residue  1396 is HOH B  392-  
Residue  1397 is HOH B  393-  
Residue  1398 is HOH B  394-  
Residue  1399 is HOH B  402-  
Residue  1400 is HOH B  404-  
Residue  1401 is HOH B  405-  
Residue  1402 is HOH B  406-  
Residue  1403 is HOH B  407-  
Residue  1404 is HOH B  408-  
 6953 potential contact atoms selected from  1404 residues.

Checking for disulphide bridges . . . done.
Checking for neighbours . . . 
Warning: unusual CA-CA distance for contact number   681 : distance =  12.0
   (ri =   108,  rj =   132)
Warning: unusual CA-CA distance for contact number  1403 : distance =  12.3
   (ri =   217,  rj =   232)
Warning: unusual CA-CA distance for contact number  3354 : distance =  12.3
   (ri =   802,  rj =   826)
Warning: unusual CA-CA distance for contact number  4067 : distance =  12.2
   (ri =   911,  rj =   926)
 5314 neighbouring contacts found.
* Program completed

Program anglen

 
ANGLEN - Calculation of bond lengths and angles
-----------------------------------------------
 
 Enter filename containing coordinates of structure
 * Program completed

Program tplot

 
Phi-psi and chi1-chi2 distributions
-----------------------------------
 
 Enter filename of coordinates
 Enter required chain-ID, or leave blank for all
 Enter resolution
 Is this an ensemble of structures (Y/N)?
 Main Ramachandran plot          * File: pdb8aat_01.ps
         401 residues read in
 Gly & Pro Ramachandran plots    * File: pdb8aat_02.ps
         401 residues read in
 All-residue chi1-chi2 plots     * File: pdb8aat_03.ps
                                 * File: pdb8aat_04.ps
         401 residues read in
         401 residues read in
         401 residues read in
         401 residues read in
 * Program complete

Program pplot

 
Plots and residue-by-residue listing
------------------------------------
 
 Enter filename containing coordinates of structure
 Enter required chain-ID, or leave blank for all
 Enter resolution
 Main-chain parameters           * File: pdb8aat_05.ps
 Side-chain parameters           * File: pdb8aat_06.ps
 Residue properties plot         * File: pdb8aat_07.ps
     * cis-peptide:  PRO A  138 
     * cis-peptide:  PRO A  195 
                                 * File: pdb8aat_08.ps
                                 * File: pdb8aat_09.ps
                                 * File: pdb8aat_10.ps
                                 * File: pdb8aat_11.ps
 *
 * Detailed listing: pdb8aat.out
 *
 * Program complete

Program bplot

 
Main-chain bond-lengths and angles, and planar groups
-----------------------------------------------------
 
 Enter filename containing coordinates of structure
 Enter required chain-ID, or leave blank for all
 Main-chain bond lengths         * File: pdb8aat_12.ps
 Main-chain bond angles          * File: pdb8aat_13.ps
                                 * File: pdb8aat_14.ps
 RMS distances from planarity    * File: pdb8aat_15.ps
 Distorted geometry              * File: pdb8aat_16.ps
    * Distorted main-chain bonds:            3
    * Distorted main-chain angles:          14
    * Distorted planar groups:               0
 * Program complete
 *
 * Summary page: pdb8aat.sum
 *

Program makehtml

 Enter output directory name
 Enter output URL

Converting Postscript Files to GIF Format

done

Removing Temporary Files

done