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naomi
- brief description
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naomi is a sophisticated computer program system for studying the
three-dimensional structure of proteins at the atomic level.
- general structural analysis
- dealing with problematic pdb files
- simulating dynamic properties of proteins
- prediction of protein function from 3-d structure
- protein engineering and design
- nmr structure refinement
- tertiary structure prediction
- prediction of protein folding pathways
- machines
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- silicon graphics :- (muck, eigg, rhum, jura only)
- prerequisites
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- academic version only
- setenv naomi_lm /local/irix52/lib/naomi/
- the line @/local/irix52/lib/naomi/alloc_memeory.inp (or equivalent) must appear in any naomi scripts
- command line
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- prompt-> naomi < file1 > file2 {rtn}
- documentation
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